Evidence map›Paper›PMID 26467019›Full record

ArticleParasites & vectors2015

Molecular characterization and classification of Trypanosoma spp. Venezuelan isolates based on microsatellite markers and kinetoplast maxicircle genes.

E Sánchez, T Perrone, G Recchimuzzi, I Cardozo, N Biteau, P M Aso, A Mijares, T Baltz, D Berthier, L Balzano-Nogueira and 1 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 51 citations in OpenAlex.

  1. Pooled it
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  11. Molecular and phylogenetic analysis of a type K1 strainBiochemistry and biophysics reports · 2023
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  12. Mining the pervasiveness of surra in different animal species of Northeastern states of India: Assam, Mizoram and Tripura.Journal of parasitic diseases : official organ of the Indian Society for Parasitology · 2021
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  13. Seroprevalence ofParasite epidemiology and control · 2021
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  14. Review
  15. Veterinary parasitology: X · 2019
    Article
  16. Review
  17. Draft Genome Sequence ofMicrobiology resource announcements · 2019
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  18. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

E SánchezLaboratorio de Fisiología de Parásitos. Centro de Biofísica y Bioquímica, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela. evsanchu@ivic.gob.ve.
T PerroneLaboratorio de Fisiología de Parásitos. Centro de Biofísica y Bioquímica, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela. mgonzat@gmail.com.
G RecchimuzziGrupo de Bioquímica e Inmunología de Hemoparásitos. Departamento de Biología Celular, Universidad Simón Bolívar, Caracas, 1080, Venezuela. aninnaig.87@gmail.com.
I CardozoLaboratorio de Fisiología de Parásitos. Centro de Biofísica y Bioquímica, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela. cardozo.iralis@gmail.com.
N BiteauLaboratoire de Microbiologie Fondamentale et Pathogénicité, Université Bordeaux. UMR-CNRS 5234, 146, Rue Léo Saignat, 33076, Bordeaux, Cedex, France. nicolas.biteau@u-bordeaux.fr.
P M AsoGrupo de Bioquímica e Inmunología de Hemoparásitos. Departamento de Biología Celular, Universidad Simón Bolívar, Caracas, 1080, Venezuela. pedrom@usb.ve.
A MijaresLaboratorio de Fisiología de Parásitos. Centro de Biofísica y Bioquímica, Instituto Venezolano de Investigaciones Científicas, Caracas, Venezuela. amijares@ivic.gob.ve.
T BaltzLaboratoire de Microbiologie Fondamentale et Pathogénicité, Université Bordeaux. UMR-CNRS 5234, 146, Rue Léo Saignat, 33076, Bordeaux, Cedex, France. theo.baltz@u-bordeaux.fr.
D BerthierCIRAD, UMR InterTryp, F-34398, Montpellier, France. david.berthier@cirad.fr.
L Balzano-NogueiraLaboratorio de Biometría y Estadística, Área de Agricultura y Soberanía Alimentaria, Instituto de Estudios Avanzados, Caracas, 1015A, Venezuela. leobalzano@gmail.com.
M I GonzattiGrupo de Bioquímica e Inmunología de Hemoparásitos. Departamento de Biología Celular, Universidad Simón Bolívar, Caracas, 1080, Venezuela. mgonzat@usb.ve.
Instituto Venezolano de Investigaciones Científicas · VESimón Bolívar University · VELaboratoire de Microbiologie Fondamentale et PathogénicitéCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRInstituto de Estudios Avanzados · VE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLivestock trypanosomoses, caused by three species of the Trypanozoon subgenus, Trypanosoma brucei brucei, T. evansi and T. equiperdum is widely distributed throughout the world and constitutes an important limitation for the production of animal protein. T. evansi and T. equiperdum are morphologically indistinguishable parasites that evolved from a common ancestor but acquired important biological differences, including host range, mode of transmission, distribution, clinical symptoms and pathogenicity. At a molecular level, T. evansi is characterized by the complete loss of the maxicircles of the kinetoplastic DNA, while T. equiperdum has retained maxicircle fragments similar to those present in T. brucei. T. evansi causes the disease known as Surra, Derrengadera or "mal de cadeiras", while T. equiperdum is the etiological agent of dourine or "mal du coit", characterized by venereal transmission and white patches in the genitalia.

methodsNine Venezuelan Trypanosoma spp. isolates, from horse, donkey or capybara were genotyped and classified using microsatellite analyses and maxicircle genes. The variables from the microsatellite data and the Procyclin PE repeats matrices were combined using the Hill-Smith method and compared to a group of T. evansi, T. equiperdum and T. brucei reference strains from South America, Asia and Africa using Coinertia analysis. Four maxicircle genes (cytb, cox1, a6 and nd8) were amplified by PCRfrom TeAp-N/D1 and TeGu-N/D1, the two Venezuelan isolates that grouped with the T. equiperdum STIB841/OVI strain. These maxicircle sequences were analyzed by nucleotide BLAST and aligned toorthologous genes from the Trypanozoon subgenus by MUSCLE tools. Phylogenetic trees were constructed using Maximum Parsimony (MP) and Maximum Likelihood (ML) with the MEGA5.1® software.

resultsWe characterized microsatellite markers and Procyclin PE repeats of nine Venezuelan Trypanosoma spp. isolates with various degrees of virulence in a mouse model, and compared them to a panel of T. evansi and T. equiperdum reference strains. Coinertia analysis of the combined repeats and previously reported T. brucei brucei microsatellite genotypes revealed three distinct groups. Seven of the Venezuelan isolates grouped with globally distributed T. evansi strains, while TeAp-N/D1 and TeGu-N/D1 strains clustered in a separate group with the T. equiperdum STIB841/OVI strain isolated in South Africa. A third group included T. brucei brucei, two strains previously classified as T. evansi (GX and TC) and one as T. equiperdum (BoTat-1.1). Four maxicircle genes, Cytochrome b, Cythocrome Oxidase subunit 1, ATP synthase subunit 6 and NADH dehydrogenase subunit 8, were identified in the two Venezuelan strains clustering with the T. equiperdum STIB841/OVI strain. Phylogenetic analysis of the cox1 gene sequences further separated these two Venezuelan T. equiperdum strains: TeAp-N/D1 grouped with T. equiperdum strain STIB818 and T. brucei brucei, and TeGu-N/D1 with the T. equiperdum STIB841/OVI strain.

conclusionBased on the Coinertia analysis and maxicircle gene sequence phylogeny, TeAp-N/D1 and TeGu-N/D1 constitute the first confirmed T. equiperdum strains described from Latin America.

Indexed as

DNA, KinetoplastGenes, ProtozoanGenetic VariationGenotypeMicrosatellite RepeatsAnimalsCluster AnalysisDNA, ProtozoanEquidaeHorsesMolecular Sequence DataPhylogenyRodentiaSequence Analysis, DNASequence HomologyTrypanosomaDNA, KinetoplastDNA, Protozoan

Identifiers

PMID26467019
PMCPMC4607141
OpenAlexW1915523599

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.