Evidence map›Paper›PMID 26466852›Full record

ArticlePlant biotechnology journal2016

High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool.

Mark O Winfield, Alexandra M Allen, Amanda J Burridge, Gary L A Barker, Harriet R Benbow, Paul A Wilkinson, Jane Coghill, Christy Waterfall, Alessandro Davassi, Geoff Scopes and 10 more

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 234 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
234citing papers in PubMed, 6 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

234 citing papers in PubMed, 6 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Meta-QTLs for multiple disease resistance involving three rusts in common wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Pooled it
  4. Pooled it
  5. Meta-QTLs, ortho-meta-QTLs and candidate genes for grain yield and associated traits in wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Pooled it
  6. Pooled it
  7. Article
  8. Genome-Wide Identification and Expression Analysis of theCurrent issues in molecular biology · 2026
    Article
  9. Review
  10. Mining QTLs and candidate genes in bread wheat associated with kernel hardness through GWAS.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  11. Article
  12. Article
  13. Identification and validation of a QTL, QSNS.caas-3D.1, for spikelet number per spike in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  14. Review
  15. Article
  16. Unlocking the genetic potential ofFrontiers in plant science · 2026
    Review
  17. Article
  18. Article
  19. Development and Characterization of Wheat-Plants (Basel, Switzerland) · 2025
    Article
  20. Article

174 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Mark O WinfieldLife Sciences, University of Bristol, Bristol, UK.
Alexandra M AllenLife Sciences, University of Bristol, Bristol, UK.
Amanda J BurridgeLife Sciences, University of Bristol, Bristol, UK.
Gary L A BarkerLife Sciences, University of Bristol, Bristol, UK.
Harriet R BenbowLife Sciences, University of Bristol, Bristol, UK.
Paul A WilkinsonLife Sciences, University of Bristol, Bristol, UK.
Jane CoghillLife Sciences, University of Bristol, Bristol, UK.
Christy WaterfallLife Sciences, University of Bristol, Bristol, UK.
Alessandro DavassiAffymetrix UK Ltd, High Wycombe, UK.
Geoff ScopesAffymetrix UK Ltd, High Wycombe, UK.
Ali PiraniAffymetrix UK Ltd, High Wycombe, UK.
Teresa WebsterAffymetrix UK Ltd, High Wycombe, UK.
Fiona BrewAffymetrix UK Ltd, High Wycombe, UK.
Claire BloorAffymetrix UK Ltd, High Wycombe, UK.
Julie KingSchool of Biosciences, Sutton Bonington, Leicestershire, UK.
Claire WestJohn Innes Centre, Norwich Research Park, Norwich, Norfolk, UK.
Simon GriffithsJohn Innes Centre, Norwich Research Park, Norwich, Norfolk, UK.
Ian KingSchool of Biosciences, Sutton Bonington, Leicestershire, UK.
Alison R BentleyThe John Bingham Laboratory, NIAB, Cambridge, UK.
Keith J EdwardsLife Sciences, University of Bristol, Bristol, UK.

Funding

Biotechnology and Biological Sciences Research Council BB/E006868/1Biotechnology and Biological Sciences Research Council BB/I003207/1Biotechnology and Biological Sciences Research Council BB/I017496/1Biotechnology and Biological Sciences Research Council BB/L01386X/1
6 · The paper itself

Abstract

In wheat, a lack of genetic diversity between breeding lines has been recognized as a significant block to future yield increases. Species belonging to bread wheat's secondary and tertiary gene pools harbour a much greater level of genetic variability, and are an important source of genes to broaden its genetic base. Introgression of novel genes from progenitors and related species has been widely employed to improve the agronomic characteristics of hexaploid wheat, but this approach has been hampered by a lack of markers that can be used to track introduced chromosome segments. Here, we describe the identification of a large number of single nucleotide polymorphisms that can be used to genotype hexaploid wheat and to identify and track introgressions from a variety of sources. We have validated these markers using an ultra-high-density Axiom(®) genotyping array to characterize a range of diploid, tetraploid and hexaploid wheat accessions and wheat relatives. To facilitate the use of these, both the markers and the associated sequence and genotype information have been made available through an interactive web site.

Indexed as

Polymorphism, Single NucleotideBreedingGene PoolGenetic MarkersGenetic VariationGenome, PlantGenotypeGenotyping TechniquesOligonucleotide Array Sequence AnalysisPolyploidyTriticumGenetic Markersgenotyping arraynext-generation sequencingsecondary and tertiary gene poolssingle nucleotide polymorphismwheatwheat progenitors

Identifiers

PMID26466852
PMCPMC4950041

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.