Evidence map›Paper›PMID 26466373›Full record

ArticlePloS one2015

Inferring Models of Bacterial Dynamics toward Point Sources.

Hossein Jashnsaz, Tyler Nguyen, Horia I Petrache, Steve Pressé

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Hydrodynamic Hunters.Biophysical journal · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hossein JashnsazPhysics Dept., Indiana Univ. - Purdue Univ. Indianapolis, Indianapolis, IN, 46202, United States of America.
Tyler NguyenStark Neuroscience Institute, Indiana Univ. School of Medicine, Indianapolis, IN 46202, United States of America.
Horia I PetrachePhysics Dept., Indiana Univ. - Purdue Univ. Indianapolis, Indianapolis, IN, 46202, United States of America.
Steve PresséPhysics Dept., Indiana Univ. - Purdue Univ. Indianapolis, Indianapolis, IN, 46202, United States of America; Dept. of Cell and Integrative Physiology, Indiana Univ. School of Medicine, Indianapolis, IN 46202, United States of America.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Experiments have shown that bacteria can be sensitive to small variations in chemoattractant (CA) concentrations. Motivated by these findings, our focus here is on a regime rarely studied in experiments: bacteria tracking point CA sources (such as food patches or even prey). In tracking point sources, the CA detected by bacteria may show very large spatiotemporal fluctuations which vary with distance from the source. We present a general statistical model to describe how bacteria locate point sources of food on the basis of stochastic event detection, rather than CA gradient information. We show how all model parameters can be directly inferred from single cell tracking data even in the limit of high detection noise. Once parameterized, our model recapitulates bacterial behavior around point sources such as the "volcano effect". In addition, while the search by bacteria for point sources such as prey may appear random, our model identifies key statistical signatures of a targeted search for a point source given any arbitrary source configuration.

Indexed as

Bacterial Physiological PhenomenaChemotaxisModels, TheoreticalBacteriaChemotactic FactorsChemotactic Factors

Identifiers

PMID26466373
PMCPMC4605597

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.