Evidence map›Paper›PMID 26465836›Full record

ArticleNature communications2015

ATP binding to neighbouring subunits and intersubunit allosteric coupling underlie proteasomal ATPase function.

Young-Chan Kim, Aaron Snoberger, Jane Schupp, David M Smith

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular mechanisms of mitochondrial AAA+ proteases.The Journal of biological chemistry · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. AAA+ proteins: one motor, multiple ways to work.Biochemical Society transactions · 2022
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Cryo-EM structures of the archaeal PAN-proteasome reveal an around-the-ring ATPase cycle.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Young-Chan KimDepartment of Biochemistry, West Virginia University, 1 Medical Center Drive, Morgantown, West Virginia 26506, USA.
Aaron SnobergerDepartment of Biochemistry, West Virginia University, 1 Medical Center Drive, Morgantown, West Virginia 26506, USA.
Jane SchuppDepartment of Biochemistry, West Virginia University, 1 Medical Center Drive, Morgantown, West Virginia 26506, USA.
David M SmithDepartment of Biochemistry, West Virginia University, 1 Medical Center Drive, Morgantown, West Virginia 26506, USA.
West Virginia University · US

Funding

Mechanisms regulating proteasomal substrate degradationR01GM107129 · NIGMS · WEST VIRGINIA UNIVERSITY · PI SMITH, DAVID MATTHEW · 2014 to 2022
$2.7M
Allosteric regulation of the proteasomal ATPasesF31GM115171 · NIGMS · WEST VIRGINIA UNIVERSITY · PI SNOBERGER, AARON M · 2015 to 2016
$68k
NIGMS NIH HHS F31 GM115171NIGMS NIH HHS F31GM115171NIGMS NIH HHS R01 GM107129NIGMS NIH HHS R01GM107129
6 · The paper itself

Abstract

The primary functions of the proteasome are driven by a highly allosteric ATPase complex. ATP binding to only two subunits in this hexameric complex triggers substrate binding, ATPase-20S association and 20S gate opening. However, it is unclear how ATP binding and hydrolysis spatially and temporally coordinates these allosteric effects to drive substrate translocation into the 20S. Here, we use FRET to show that the proteasomal ATPases from eukaryotes (RPTs) and archaea (PAN) bind ATP with high affinity at neighbouring subunits, which complements the well-established spiral-staircase topology of the 26S ATPases. We further show that two conserved arginine fingers in PAN located at the subunit interface work together as a single allosteric unit to mediate the allosteric effects of ATP binding, without altering the nucleotide-binding pattern. Rapid kinetics analysis also shows that ring resetting of a sequential hydrolysis mechanism can be explained by thermodynamic equilibrium binding of ATP. These data support a model whereby these two functionally distinct allosteric networks cooperate to translocate polypeptides into the 20S for degradation.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateAllosteric RegulationHumansHydrolysisProteasome Endopeptidase ComplexAdenosine TriphosphatasesAdenosine TriphosphateATP dependent 26S proteasePAN enzymeProteasome Endopeptidase Complex

Identifiers

PMID26465836
PMCPMC4608255
OpenAlexW2262458857

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.