Evidence map›Paper›PMID 26465143›Full record

ArticlePloS one2015

Isolation and Genomic Characterization of a Duck-Origin GPV-Related Parvovirus from Cherry Valley Ducklings in China.

Hao Chen, Yanguo Dou, Yi Tang, Zhenjie Zhang, Xiaoqiang Zheng, Xiaoyu Niu, Jing Yang, Xianglong Yu, Youxiang Diao

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Hao ChenCollege of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, 271018, China.
Yanguo DouCollege of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, 271018, China.
Yi TangCollege of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, 271018, China.
Zhenjie ZhangCollege of Basic Medicine, Taishan Medical University, Tai'an, Shandong, 271000, China.
Xiaoqiang ZhengCollege of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, 271018, China.
Xiaoyu NiuCollege of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, 271018, China.
Jing YangCollege of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, 271018, China.
Xianglong YuCollege of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, 271018, China.
Youxiang DiaoCollege of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, 271018, China.
Shandong Agricultural University · CNTaishan Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A newly emerged duck parvovirus, which causes beak atrophy and dwarfism syndrome (BADS) in Cherry Valley ducks, has appeared in Northern China since March 2015. To explore the genetic diversity among waterfowl parvovirus isolates, the complete genome of an identified isolate designated SDLC01 was sequenced and analyzed in the present study. Genomic sequence analysis showed that SDLC01 shared 90.8%-94.6% of nucleotide identity with goose parvovirus (GPV) isolates and 78.6%-81.6% of nucleotide identity with classical Muscovy duck parvovirus (MDPV) isolates. Phylogenetic analysis of 443 nucleotides (nt) of the fragment A showed that SDLC01 was highly similar to a mule duck isolate (strain D146/02) and close to European GPV isolates but separate from Asian GPV isolates. Analysis of the left inverted terminal repeat regions revealed that SDLC01 had two major segments deleted between positions 160-176 and 306-322 nt compared with field GPV and MDPV isolates. Phylogenetic analysis of Rep and VP1 encoded by two major open reading frames of parvoviruses revealed that SDLC01 was distinct from all GPV and MDPV isolates. The viral pathogenicity and genome characterization of SDLC01 suggest that the novel GPV (N-GPV) is the causative agent of BADS and belongs to a distinct GPV-related subgroup. Furthermore, N-GPV sequences were detected in diseased ducks by polymerase chain reaction and viral proliferation was demonstrated in duck embryos and duck embryo fibroblast cells.

Indexed as

AnimalsBeakChinaDucksGeeseGenomeMolecular Sequence DataParvoviridae InfectionsParvovirusPhylogenyPoultry Diseases

Identifiers

PMID26465143
PMCPMC4605506
OpenAlexW2341206287

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.