Evidence map›Paper›PMID 26464619›Full record

ArticleInternational journal of clinical and experimental pathology2015

Long noncoding RNA expression profiles of the doxorubicin-resistant human osteosarcoma cell line MG63/DXR and its parental cell line MG63 as ascertained by microarray analysis.

Kun-Peng Zhu, Chun-Lin Zhang, Guo-Qi Shen, Zhong-Sheng Zhu

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In one paragraph

Article in International journal of clinical and experimental pathology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 2 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 2 syntheses or guidelines pooled it, 52 citations in OpenAlex.

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  20. RETRACTED: LncRNA ODRUL Contributes to Osteosarcoma Progression through the miR-3182/MMP2 AxisMolecular therapy : the journal of the American Society of Gene Therapy · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Kun-Peng ZhuDepartment of Orthopaedic Surgery, The Sixth People's Hospital Affiliated to Shanghai Jiaotong University Shanghai 200233, PR China.
Chun-Lin ZhangDepartment of Orthopaedic Surgery, Shanghai Tenth People's Hospital Affiliated to Tongji University Shanghai 200072, PR China.
Guo-Qi ShenDepartment of Orthopaedic Surgery, Shanghai Sixth People's Hospital, Soochow University Shanghai 200233, PR China.
Zhong-Sheng ZhuDepartment of Orthopaedic Surgery, Shanghai Tenth People's Hospital Affiliated to Tongji University Shanghai 200072, PR China.
Shanghai Tenth People's Hospital · CNShanghai Sixth People's Hospital · CNSoochow University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long non-coding RNAs (lncRNAs) are emerging in molecular biology as crucial regulators of cancer. The efficacy of doxorubicin--based chemotherapy in osteosarcoma (OS) is usually limited by acquired drug resistance. To explore the mechanism of chemoresistance of OS in terms of lncRNA, using a human lncRNA-mRNA combined microarray, we identified 3,465 lncRNAs (1,761 up and 1,704 down) and 3,278 mRNAs (1,607 up and 1,671 down) aberrantly expressed in all three sets of doxorubicin-resistant MG63/DXR and their paired parental MG63 cells (fold-change >2.0, P<0.05 and FDR <0.05). Fifteen randomly selected lncRNAs were dysregulated in MG63/DXR cells relative to MG63 cells by qRT-PCR detection, which were consistent with our microarray data. Bioinformatics analysis identified that classical genes and pathways involved in cell proliferation, apoptosis, and drug metabolism were differently expressed in these cell lines. A lncRNA-mRNA co-expression network identified lncRNAs, including ENST00000563280 and NR-036444, may play a critical role in doxorubicin-resistance of OS by interacting with important genes such as ABCB1, HIF1A and FOXC2. Besides, we found that lncRNA ENST00000563280 was distinctly increased in specimens of OS patients with a poor chemoresponse compared to those with a good chemoresponse and the patients of lower expression of it may survive longer than those of higher expression, which suggest that it may serve as a biomarker to predict the chemoresponse and prognosis of osteosarcoma patients. These results provide important insights about the lncRNAs involved in osteosarcoma chemoresistance and lay a solid foundation for uncovering the mechanism ultimately.

Indexed as

AdolescentAdultAntineoplastic AgentsBone NeoplasmsCell Line, TumorChildDoxorubicinDrug Resistance, NeoplasmFemaleGene Expression ProfilingHumansKaplan-Meier EstimateMaleOligonucleotide Array Sequence AnalysisOsteosarcomaPolymerase Chain ReactionAntineoplastic AgentsDoxorubicinRNA, Long Noncodingchemoresistancedrug-resistantlong-noncoding RNAOsteosarcoma

Identifiers

PMID26464619
PMCPMC4583851
OpenAlexW2234171363

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.