Evidence map›Paper›PMID 26464444›Full record

ArticleNucleic acids research2015

Trans-oligomerization of duplicated aminoacyl-tRNA synthetases maintains genetic code fidelity under stress.

Miguel Ángel Rubio, Mauro Napolitano, Jesús A G Ochoa de Alda, Javier Santamaría-Gómez, Carl J Patterson, Andrew W Foster, Roque Bru-Martínez, Nigel J Robinson, Ignacio Luque

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  4. Article
  5. Protein metalation in biology.Current opinion in chemical biology · 2022
    Review
  6. Review
  7. Bacterial translation machinery for deliberate mistranslation of the genetic code.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Article
  9. Article
  10. Environmental adaptation ofInternational journal of biological sciences · 2018
    Article
  11. Bioinformatic Analysis Reveals Archaeal tRNALife (Basel, Switzerland) · 2017
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Miguel Ángel RubioInstituto de Bioquímica Vegetal y Fotosíntesis, C.S.I.C. and Universidad de Sevilla, Avda Américo Vespucio 49, E-41092 Seville, Spain.
Mauro NapolitanoInstituto de Bioquímica Vegetal y Fotosíntesis, C.S.I.C. and Universidad de Sevilla, Avda Américo Vespucio 49, E-41092 Seville, Spain.
Jesús A G Ochoa de AldaFacultad de Formación del Profesorado. Universidad de Extremadura, Avda de la Universidad s/n. E-10003, Cáceres, Spain.
Javier Santamaría-GómezInstituto de Bioquímica Vegetal y Fotosíntesis, C.S.I.C. and Universidad de Sevilla, Avda Américo Vespucio 49, E-41092 Seville, Spain.
Carl J PattersonSBBS and Chemistry, Durham University, Durham DH1 BLE, UK.
Andrew W FosterSBBS and Chemistry, Durham University, Durham DH1 BLE, UK.
Roque Bru-MartínezDepartment of Agrochemistry and Biochemistry, Faculty of Science, University of Alicante, E-03080, Spain.
Nigel J RobinsonSBBS and Chemistry, Durham University, Durham DH1 BLE, UK.
Ignacio LuqueInstituto de Bioquímica Vegetal y Fotosíntesis, C.S.I.C. and Universidad de Sevilla, Avda Américo Vespucio 49, E-41092 Seville, Spain ignacio.luque@ibvf.csic.es.
Instituto de Bioquímica Vegetal y Fotosíntesis · ESDurham University · GBUniversidad de Extremadura · ESUniversity of Alicante · ES

Funding

Biotechnology and Biological Sciences Research Council BB/L009226/1
6 · The paper itself

Abstract

Aminoacyl-tRNA synthetases (aaRSs) play a key role in deciphering the genetic message by producing charged tRNAs and are equipped with proofreading mechanisms to ensure correct pairing of tRNAs with their cognate amino acid. Duplicated aaRSs are very frequent in Nature, with 25,913 cases observed in 26,837 genomes. The oligomeric nature of many aaRSs raises the question of how the functioning and oligomerization of duplicated enzymes is organized. We characterized this issue in a model prokaryotic organism that expresses two different threonyl-tRNA synthetases, responsible for Thr-tRNA(Thr) synthesis: one accurate and constitutively expressed (T1) and another (T2) with impaired proofreading activity that also generates mischarged Ser-tRNA(Thr). Low zinc promotes dissociation of dimeric T1 into monomers deprived of aminoacylation activity and simultaneous induction of T2, which is active for aminoacylation under low zinc. T2 either forms homodimers or heterodimerizes with T1 subunits that provide essential proofreading activity in trans. These findings evidence that in organisms with duplicated genes, cells can orchestrate the assemblage of aaRSs oligomers that meet the necessities of the cell in each situation. We propose that controlled oligomerization of duplicated aaRSs is an adaptive mechanism that can potentially be expanded to the plethora of organisms with duplicated oligomeric aaRSs.

Indexed as

Genes, DuplicateAmino Acyl-tRNA SynthetasesAnabaenaGenetic CodeIsoenzymesProtein MultimerizationRNA EditingStress, PhysiologicalThreonine-tRNA LigaseZincAmino Acyl-tRNA SynthetasesIsoenzymesThreonine-tRNA LigaseZinc

Identifiers

PMID26464444
PMCPMC4787780
OpenAlexW2172320903

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.