Evidence map›Paper›PMID 26464198›Full record

ArticleBiochimica et biophysica acta2016

Ion channel activity of the CSFV p7 viroporin in surrogates of the ER lipid bilayer.

Eneko Largo, Carmina Verdiá-Báguena, Vicente M Aguilella, José L Nieva, Antonio Alcaraz

Open access · bronzeAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
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  6. Article
  7. Article
  8. Characterization of the SARS-CoV-2 E Protein: Sequence, Structure, Viroporin, and Inhibitors.Protein science : a publication of the Protein Society · 2021
    Review
  9. Review
  10. Article
  11. Viroporins and inflammasomes: A key to understand virus-induced inflammation.The international journal of biochemistry & cell biology · 2020
    Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Eneko LargoBiophysics Unit (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country (UPV/EHU), P.O. Box 644, 48080 Bilbao, Spain.
Carmina Verdiá-BáguenaLaboratory of Molecular Biophysics, Department of Physics, University Jaume I, 12071 Castellón, Spain.
Vicente M AguilellaLaboratory of Molecular Biophysics, Department of Physics, University Jaume I, 12071 Castellón, Spain.
José L NievaBiophysics Unit (CSIC, UPV/EHU), Department of Biochemistry and Molecular Biology, University of the Basque Country (UPV/EHU), P.O. Box 644, 48080 Bilbao, Spain.
Antonio AlcarazLaboratory of Molecular Biophysics, Department of Physics, University Jaume I, 12071 Castellón, Spain. Electronic address: alcaraza@uji.es.
Universitat Jaume I · ESUniversity of the Basque Country · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viroporins comprise a family of non-structural proteins that play significant and diverse roles during the replication cycle of many animal viruses. Consequently, they have become promising targets for inhibitory drug and vaccine development. Structure–function traits common to all members of the family are their small size (ca. 60–120 aa), high hydrophobicity, and the presence of helical domains that transverse the membrane and assemble into oligomeric-permeating structures therein. The possibility that viroporins show in particular conditions any kind of specificity in the transport of ions and small solutes remains a point of contention in the field. Here we have approached this issue using the Classical Swine Fever Virus (CSFV) protein p7 viroporin as a model. We have previously reported that CSFV-p7 induces release of ANTS (MW: 427.33) from lipid vesicles that emulate the Endoplasmic Reticulum (ER) membrane, and that this process is dependent on pH, modulated by the lipid composition, and recreated by a C-terminal transmembrane helix. Here we have assayed CSFV-p7 for its capacity to form ion-conducting channels in ER-like planar lipid membranes, and established whether this activity is subject to regulation by the same factors. The analysis of electrophysiological recordings in ER membrane surrogates suggests that CSFV-p7 forms pores wide enough to allow ANTS release. Moreover, we were able to discriminate between two pore structures with slightly different sizes and opposite ion selectivities. The fact that the relative abundances of each pore type depend crucially on membrane composition strengthens the view that the physicochemical properties of the lipid bilayers present in the cell endomembrane system modulate viroporin activity.

Indexed as

Biomimetic MaterialsCholesterolClassical Swine Fever VirusEndoplasmic ReticulumFluorescent DyesHydrophobic and Hydrophilic InteractionsIon ChannelsIon TransportLipid BilayersModels, MolecularNaphthalenesPhosphatidylcholinesPhosphatidylethanolaminesPhosphatidylinositolsProtein Structure, SecondaryProtein Structure, Tertiary8-amino-1,3,6-naphthalenetrisulfonic acidCholesterolFluorescent DyesIon ChannelsLipid BilayersNaphthalenesPhosphatidylcholinesphosphatidylethanolaminePhosphatidylethanolaminesPhosphatidylinositolsUnilamellar LiposomesViral Regulatory and Accessory ProteinsIon channelsLipid vesiclesPlanar membranesViroporins

Identifiers

PMID26464198
PMCPMC7094309
OpenAlexW2184020808

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.