Evidence map›Paper›PMID 26464187›Full record

ArticleProtoplasma2016

Molecular cloning and promoter analysis of squalene synthase and squalene epoxidase genes from Betula platyphylla.

Mengyan Zhang, Siyao Wang, Jing Yin, Chunxiao Li, Yaguang Zhan, Jialei Xiao, Tian Liang, Xin Li

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In one paragraph

Article in Protoplasma, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 37 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Mengyan ZhangCollege of Life Science, Northeast Forestry University, Harbin, 150040, China.
Siyao WangCollege of Life Science, Northeast Forestry University, Harbin, 150040, China.
Jing YinCollege of Life Science, Northeast Forestry University, Harbin, 150040, China. yinjing20135@163.com.
Chunxiao LiCollege of Life Science, Northeast Forestry University, Harbin, 150040, China.
Yaguang ZhanCollege of Life Science, Northeast Forestry University, Harbin, 150040, China.
Jialei XiaoCollege of Life Science, Northeast Agriculture University, Harbin, 150010, China.
Tian LiangCollege of Life Science, Northeast Forestry University, Harbin, 150040, China.
Xin LiCollege of Life Science, Northeast Forestry University, Harbin, 150040, China.
Northeast Forestry University · CNNortheast Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Betula platyphylla is a rich repository of pharmacologically active secondary metabolites known as birch triterpenoids (TBP). Here, we cloned the squalene synthase (SS) and squalene epoxidase genetic (SE) sequences from B. platyphylla that encode the key enzymes that are involved in triterpenoid biosynthesis and analyzed the conserved domains and phylogenetics of their corresponding proteins. The full-length sequence of BpSS is 1588 bp with a poly-A tail, which contained an open reading frame (ORF) of 1241 bp that encoded a protein of 413 amino acids. Additionally, the BpSE full-length sequence of 2040 bp with a poly-A tail was also obtained, which contained an ORF of 1581 bp encoding a protein of 526 amino acids. Their organ-specific expression patterns in 4-week-old tissue culture seedlings of B. platyphylla were detected by real-time PCR and showed that they were all highly expressed in leaves, as compared to stem and root tissues. Additionaly, both BpSS and BpSE were enhanced following stimulation with ethephon and MeJA. The expression of BpSS was enhanced by ABA, whereas BpSE was not. The SA treatment did not affect the BpSS and BpSE transcripts notably. Using a genome walking approach, promoter sequences of 965 and 1193 bp, respectively, for BpSS and BpSE were isolated, and they revealed several key cis-regulatory elements known to be involved in the response to phytohormone and abiotic plant stress. We also found that the BpSS protein is localized in the cytoplasm. Opening reading frames of BpSS and BpSE were ligated into yeast expression plasmid pYES2 under control of GAL1 promoter and introduced into the yeast INVScl1 strain. The transformants were cultured for 12 h, the squalene content of galactose-induced BpSS expression yeast cells was 13.2 times of control (empty vector control yeast cells) by high-performance liquid chromatography (HPLC) test method. And, the squalene epoxidase activity of induced BpSE expression yeast cell was about 11.8 times of control. These indicated that we cloned birch BpSS and BpSE that were indeed involved in the synthesis of triteropenoids. This is the first report wherein SS and SE from B. platyphylla were cloned and may be of significant interest to understand the regulatory role of SS and SE in the triterpenoids biosynthesis of B. platyphylla. This is the first report wherein SS and SE from B. platyphylla were cloned and may be of significant interest to understand the regulatory role of SS and SE in the biosynthesis of birch triterpenoids.

Indexed as

Amino Acid SequenceBase SequenceBetulaCloning, MolecularFarnesyl-Diphosphate FarnesyltransferaseGene Expression Regulation, PlantPlant LeavesPlant RootsPlant StemsPromoter Regions, GeneticReal-Time Polymerase Chain ReactionRegulatory Elements, TranscriptionalSequence AlignmentSequence Analysis, DNASqualene MonooxygenaseTriterpenesFarnesyl-Diphosphate FarnesyltransferaseSqualene MonooxygenaseTriterpenesBetula platyphyllaBirch triterpenoidsPromoterSqualene epoxidaseSqualene synthase

Identifiers

PMID26464187
OpenAlexW1902437881

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.