Evidence map›Paper›PMID 26462993›Full record

ArticleEnvironmental microbiology2015

Cross-talk between a regulatory small RNA, cyclic-di-GMP signalling and flagellar regulator FlhDC for virulence and bacterial behaviours.

Xiaochen Yuan, Devanshi Khokhani, Xiaogang Wu, Fenghuan Yang, Gabriel Biener, Benjamin J Koestler, Valerica Raicu, Chenyang He, Christopher M Waters, George W Sundin and 2 more

Open access · greenAbstract read
In one paragraph

Article in Environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
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  5. pGpG-signaling regulates virulence and global transcriptomic targets inbioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Small RNAs beyond Model Organisms: Have We Only Scratched the Surface?International journal of molecular sciences · 2022
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Xiaochen YuanDepartment of Biological Sciences, University of Wisconsin, Milwaukee, WI, 53211, USA.
Devanshi KhokhaniDepartment of Biological Sciences, University of Wisconsin, Milwaukee, WI, 53211, USA.
Xiaogang WuDepartment of Biological Sciences, University of Wisconsin, Milwaukee, WI, 53211, USA.
Fenghuan YangState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Gabriel BienerDepartment of Physics, University of Wisconsin, Milwaukee, WI, 53211, USA.
Benjamin J KoestlerDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, 48824, USA.
Valerica RaicuDepartment of Biological Sciences, University of Wisconsin, Milwaukee, WI, 53211, USA.
Chenyang HeState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Christopher M WatersDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, 48824, USA.
George W SundinDepartment of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, 48824, USA.
Fang TianState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.
Ching-Hong YangDepartment of Biological Sciences, University of Wisconsin, Milwaukee, WI, 53211, USA.
University of Wisconsin–Milwaukee · USMichigan State University · USInstitute of Plant Protection · CNChinese Academy of Agricultural Sciences · CN

Funding

From structure to systems: Understanding cyclic di-GMP control of transcriptionR01GM109259 · NIGMS · MICHIGAN STATE UNIVERSITY · PI WATERS, CHRISTOPHER M · 2015 to 2019
$2.0M
Developing novel technologies to address fundamental questions about second messenger signalingR03AI130554 · NIAID · MICHIGAN STATE UNIVERSITY · PI WATERS, CHRISTOPHER M · 2017 to 2018
$144k
NIAID NIH HHS R03 AI130554NIGMS NIH HHS R01 GM109259
6 · The paper itself

Abstract

Dickeya dadantii is a globally dispersed phytopathogen which causes diseases on a wide range of host plants. This pathogen utilizes the type III secretion system (T3SS) to suppress host defense responses, and secretes pectate lyase (Pel) to degrade the plant cell wall. Although the regulatory small RNA (sRNA) RsmB, cyclic diguanylate monophosphate (c-di-GMP) and flagellar regulator have been reported to affect the regulation of these two virulence factors or multiple cell behaviours such as motility and biofilm formation, the linkage between these regulatory components that coordinate the cell behaviours remain unclear. Here, we revealed a sophisticated regulatory network that connects the sRNA, c-di-GMP signalling and flagellar master regulator FlhDC. We propose multi-tiered regulatory mechanisms that link the FlhDC to the T3SS through three distinct pathways including the FlhDC-FliA-YcgR3937 pathway; the FlhDC-EcpC-RpoN-HrpL pathway; and the FlhDC-rsmB-RsmA-HrpL pathway. Among these, EcpC is the most dominant factor for FlhDC to positively regulate T3SS expression.

Indexed as

Amino Acid SequenceBacterial ProteinsCyclic GMPEnterobacteriaceaeFimbriae ProteinsFlagellaFlagellinGene Expression Regulation, BacterialPlant DiseasesPolysaccharide-LyasesRegulatory Sequences, Ribonucleic AcidSignal TransductionTranscription FactorsType III Secretion SystemsVegetablesVirulenceBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPFimbriae ProteinsFlagellinpectate lyasePolysaccharide-LyasesRegulatory Sequences, Ribonucleic AcidTranscription FactorsType III Secretion SystemsVirulence Factors

Identifiers

PMID26462993
PMCPMC6652182
OpenAlexW2151655468

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.