Evidence map›Paper›PMID 26459761›Full record

ArticleMolecular and cellular biology2016

Dynein Light Chain LC8 Is Required for RNA Polymerase I-Mediated Transcription in Trypanosoma brucei, Facilitating Assembly and Promoter Binding of Class I Transcription Factor A.

Justin K Kirkham, Sung Hee Park, Tu N Nguyen, Ju Huck Lee, Arthur Günzl

Erratum issuedAbstract read
In one paragraph

Article in Molecular and cellular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Ebolaviruses: New roles for old proteins.PLoS neglected tropical diseases · 2018
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Justin K KirkhamDepartment of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, Connecticut, USA.
Sung Hee ParkDepartment of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, Connecticut, USA.
Tu N NguyenDepartment of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, Connecticut, USA.
Ju Huck LeeDepartment of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, Connecticut, USA.
Arthur GünzlDepartment of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, Connecticut, USA gunzl@uchc.edu.

Funding

Multifunctional class I transcription in T. bruceiR01AI059377 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GUNZL, ARTHUR · 2004 to 2013
$3.4M
The role of CITFA-2 in RNA polymerase I transcription in Trypanosoma bruceiF30AI110060 · NIAID · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI KIRKHAM, JUSTIN · 2014 to 2016
$97k
NIAID NIH HHS F30 AI110060NIAID NIH HHS R01 AI059377
6 · The paper itself

Abstract

Dynein light chain LC8 is highly conserved among eukaryotes and has both dynein-dependent and dynein-independent functions. Interestingly, LC8 was identified as a subunit of the class I transcription factor A (CITFA), which is essential for transcription by RNA polymerase I (Pol I) in the parasite Trypanosoma brucei. Given that LC8 has never been identified with a basal transcription factor and that T. brucei relies on RNA Pol I for expressing the variant surface glycoprotein (VSG), the key protein in antigenic variation, we investigated the CITFA-specific role of LC8. Depletion of LC8 from mammalian-infective bloodstream trypanosomes affected cell cycle progression, reduced the abundances of rRNA and VSG mRNA, and resulted in rapid cell death. Sedimentation analysis, coimmunoprecipitation of recombinant proteins, and bioinformatic analysis revealed an LC8 binding site near the N terminus of the subunit CITFA2. Mutation of this site prevented the formation of a CITFA2-LC8 heterotetramer and, in vivo, was lethal, affecting assembly of a functional CITFA complex. Gel shift assays and UV cross-linking experiments identified CITFA2 as a promoter-binding CITFA subunit. Accordingly, silencing of LC8 or CITFA2 resulted in a loss of CITFA from RNA Pol I promoters. Hence, we discovered an LC8 interaction that, unprecedentedly, has a basal function in transcription.

Indexed as

AnimalsCytoplasmic DyneinsPromoter Regions, GeneticProtein BindingRatsRNA, MessengerRNA Polymerase ITranscription FactorsTranscription, GeneticTrypanosoma brucei bruceiCytoplasmic DyneinsDynll1 protein, ratRNA, MessengerRNA Polymerase ITranscription Factors

Identifiers

PMID26459761
PMCPMC4702606

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.