Evidence map›Paper›PMID 26459004›Full record

ArticleBiochimica et biophysica acta2016

Increased hydrophobic surface exposure in the cataract-related G18V variant of human γS-crystallin.

Domarin Khago, Eric K Wong, Carolyn N Kingsley, J Alfredo Freites, Douglas J Tobias, Rachel W Martin

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Mercury-induced aggregation of human lens γ-crystallins reveals a potential role in cataract disease.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2018
    Article
  11. Article
  12. Article
  13. Stability of Protein-Specific Hydration Shell on Crowding.Journal of the American Chemical Society · 2016
    Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Domarin KhagoDepartment of Chemistry, University of California, Irvine, Irvine, CA 92697, United States.
Eric K WongDepartment of Chemistry, University of California, Irvine, Irvine, CA 92697, United States.
Carolyn N KingsleyDepartment of Chemistry, University of California, Irvine, Irvine, CA 92697, United States.
J Alfredo FreitesDepartment of Chemistry, University of California, Irvine, Irvine, CA 92697, United States.
Douglas J TobiasDepartment of Chemistry, University of California, Irvine, Irvine, CA 92697, United States. Electronic address: dtobias@uci.edu.
Rachel W MartinDepartment of Chemistry, University of California, Irvine, Irvine, CA 92697, United States; Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA 92697, United States. Electronic address: rwmartin@uci.edu.

Funding

Solid-state NMR methods for investigating native and aggregated eye lens proteinsR01EY021514 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI MARTIN, RACHEL WAGNER · 2011 to 2022
$2.8M
NEI NIH HHS R01 EY021514NEI NIH HHS R01EY021514
6 · The paper itself

Abstract

backgroundThe objective of this study was to determine whether the cataract-related G18V variant of human γS-crystallin has increased exposure of hydrophobic residues that could explain its aggregation propensity and/or recognition by αB-crystallin.

methodsWe used an ANS fluorescence assay and NMR chemical shift perturbation to experimentally probe exposed hydrophobic surfaces. These results were compared to flexible docking simulations of ANS molecules to the proteins, starting with the solution-state NMR structures of γS-WT and γS-G18V.

resultsγS-G18V exhibits increased ANS fluorescence, suggesting increased exposed hydrophobic surface area. The specific residues involved in ANS binding were mapped by NMR chemical shift perturbation assays, revealing ANS binding sites in γS-G18V that are not present in γS-WT. Molecular docking predicts three binding sites that are specific to γS-G18V corresponding to the exposure of a hydrophobic cavity located at the interdomain interface, as well as two hydrophobic patches near a disordered loop containing solvent-exposed cysteines, all but one of which is buried in γS-WT.

conclusionsAlthough both proteins display non-specific binding, more residues are involved in ANS binding to γS-G18V, and the affected residues are localized in the N-terminal domain and the nearby interdomain interface, proximal to the mutation site. GENERAL SIGNIFICANCE: Characterization of changes in exposed hydrophobic surface area between wild-type and variant proteins can help elucidate the mechanisms of aggregation propensity and chaperone recognition, presented here in the context of cataract formation. Experimental data and simulations provide complementary views of the interactions between proteins and the small molecule probes commonly used to study aggregation. This article is part of a Special Issue entitled Crystallin Biochemistry in Health and Disease.

Indexed as

Molecular Docking SimulationProtein MultimerizationBinding SitesCataractgamma-CrystallinsGenetic VariationHumansHydrophobic and Hydrophilic InteractionsProtein BindingProtein ConformationSurface Propertiesgamma-CrystallinsANS binding assayCataractChemical shift perturbationDockingProtein aggregationStructural crystallin

Identifiers

PMID26459004
PMCPMC5942885

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.