Evidence map›Paper›PMID 26457866›Full record

ArticleBiochemistry2015

Carbon Dioxide "Trapped" in a β-Carbonic Anhydrase.

Mayank Aggarwal, Teck Khiang Chua, Melissa A Pinard, Doletha M Szebenyi, Robert McKenna

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Structure and encapsulation of carbonic anhydrase within the α-carboxysome.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
  4. Article
  5. Carbonic anhydrase versatility: from pH regulation to COFrontiers in molecular biosciences · 2023
    Article
  6. Anion inhibition studies of the α-carbonic anhydrases fromJournal of enzyme inhibition and medicinal chemistry · 2021
    Article
  7. An anion and small molecule inhibition study of the β-carbonic anhydrase fromJournal of enzyme inhibition and medicinal chemistry · 2021
    Article
  8. Review
  9. Article
  10. Zeta-carbonic anhydrases show CSComputational and structural biotechnology journal · 2021
    Article
  11. Article
  12. Article
  13. Kinetic study of catalytic CORoyal Society open science · 2019
    Article
  14. Carbonic Anhydrases: Nature's Way to Balance COBiochemistry & molecular biology journal · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Mayank AggarwalDivision of Biology and Soft Matter, Oak Ridge National Laboratory , Oak Ridge, Tennessee 37831, United States.
Teck Khiang ChuaCornell High Energy Synchrotron Source (CHESS), Cornell University , Ithaca, New York 14853, United States.
Melissa A PinardDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida , Gainesville, Florida 32610, United States.
Doletha M SzebenyiCornell High Energy Synchrotron Source (CHESS), Cornell University , Ithaca, New York 14853, United States.
Robert McKennaDepartment of Biochemistry and Molecular Biology, College of Medicine, University of Florida , Gainesville, Florida 32610, United States.
Cornell University · USUniversity of Florida · USOak Ridge National Laboratory · US

Funding

Overall (pp. 40-62)P41GM103485 · NIGMS · CORNELL UNIVERSITY · PI CERIONE, RICHARD A. · 2012 to 2018
$15.5M
CATALYTIC MECHANISM OF CARBONIC ANHYDRASER01GM025154 · NIGMS · UNIVERSITY OF FLORIDA · PI SILVERMAN, DAVID N · 1985 to 2012
$4.5M
NIGMS NIH HHS GM-103485NIGMS NIH HHS GM25154NIGMS NIH HHS P41 GM103485NIGMS NIH HHS R01 GM025154
6 · The paper itself

Abstract

Carbonic anhydrases (CAs) are enzymes that catalyze the hydration/dehydration of CO2/HCO3(-) with rates approaching diffusion-controlled limits (kcat/KM ∼ 10(8) M(-1) s(-1)). This family of enzymes has evolved disparate protein folds that all perform the same reaction at near catalytic perfection. Presented here is a structural study of a β-CA (psCA3) expressed in Pseudomonas aeruginosa, in complex with CO2, using pressurized cryo-cooled crystallography. The structure has been refined to 1.6 Å resolution with R(cryst) and R(free) values of 17.3 and 19.9%, respectively, and is compared with the α-CA, human CA isoform II (hCA II), the only other CA to have CO2 captured in its active site. Despite the lack of structural similarity between psCA3 and hCA II, the CO2 binding orientation relative to the zinc-bound solvent is identical. In addition, a second CO2 binding site was located at the dimer interface of psCA3. Interestingly, all β-CAs function as dimers or higher-order oligomeric states, and the CO2 bound at the interface may contribute to the allosteric nature of this family of enzymes or may be a convenient alternative binding site as this pocket has been previously shown to be a promiscuous site for a variety of ligands, including bicarbonate, sulfate, and phosphate ions.

Indexed as

Bacterial ProteinsCarbon DioxideCarbonic Anhydrase IICarbonic AnhydrasesCatalytic DomainCrystallography, X-RayHumansLigandsModels, MolecularProtein ConformationProtein Structure, QuaternaryPseudomonas aeruginosaRecombinant ProteinsSpecies SpecificityBacterial ProteinsCarbon DioxideCarbonic Anhydrase IICarbonic AnhydrasesLigandsRecombinant Proteins

Identifiers

PMID26457866
PMCPMC4745652
OpenAlexW2241354171

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.