Evidence map›Paper›PMID 26457647›Full record

ArticleNature genetics2015

The genomic landscape of juvenile myelomonocytic leukemia.

Elliot Stieglitz, Amaro N Taylor-Weiner, Tiffany Y Chang, Laura C Gelston, Yong-Dong Wang, Tali Mazor, Emilio Esquivel, Ariel Yu, Sara Seepo, Scott Olsen and 37 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 162 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
162citing papers in PubMed, 1 pooled it
16.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

162 citing papers in PubMed, 1 synthesis or guideline pooled it, 306 citations in OpenAlex.

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102 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

47 authors at 20 institutions in 2 countries.

Elliot Stieglitz *Department of Pediatrics, Benioff Children's Hospital, University of California, San Francisco, San Francisco, CA.
Amaro N Taylor-Weiner *Broad Institute of MIT and Harvard, Cambridge, MA.
Tiffany Y ChangDepartment of Pediatrics, Benioff Children's Hospital, University of California, San Francisco, San Francisco, CA.
Laura C GelstonDepartment of Pediatrics, Benioff Children's Hospital, University of California, San Francisco, San Francisco, CA.
Yong-Dong WangDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN.
Tali MazorDepartment of Neurological Surgery, University of California, San Francisco, CA.
Emilio EsquivelDepartment of Pediatrics, Benioff Children's Hospital, University of California, San Francisco, San Francisco, CA.
Ariel YuDepartment of Pediatrics, Benioff Children's Hospital, University of California, San Francisco, San Francisco, CA.
Sara SeepoBroad Institute of MIT and Harvard, Cambridge, MA.
Scott OlsenHartwell Center for Bioinformatics and Biotechnology, St. Jude Children's Research Hospital, Memphis, TN.
Mara RosenbergBroad Institute of MIT and Harvard, Cambridge, MA.
Sophie L ArchambeaultDepartment of Pediatrics, Benioff Children's Hospital, University of California, San Francisco, San Francisco, CA.
Ghada AbusinStead Family Department of Pediatrics, University of Iowa Carver College of Medicine, Iowa City, IA.
Kyle BeckmanDepartment of Pediatrics, Benioff Children's Hospital, University of California, San Francisco, San Francisco, CA.
Patrick A BrownDepartment of Pediatrics, The Johns Hopkins Hospital, Baltimore, MA.
Michael BrionesDepartment of Pediatrics, Emory University School of Medicine, Aflac Cancer and Blood Disorder Center, Atlanta, GA.
Benjamin CarcamoDepartment of Pediatrics, Texas Tech University, El Paso, TX.
Todd CooperDepartment of Pediatrics, Seattle Children's Hospital, Seattle, WA.
Gary V DahlDepartment of Pediatrics, Stanford School of Medicine, Stanford, CA.
Peter D EmanuelWinthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, AR.
Mark N FluchelDepartment of Pediatric Hematology Oncology, University of Utah, Salt Lake City, UT.
Rakesh K GoyalDepartment of Pediatrics, Children's Hospital of Pittsburgh of UPMC, Pittsburgh, PA.
Robert J HayashiDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO.
Johann HitzlerDivision of Hematology/Oncology, The Hospital for Sick Children, Toronto, Ontario, Canada.
Christopher HuggePediatric Hematology Oncology, SSM Cardinal Glennon Children's Medical Center, Saint Louis, MO.
Y Lucy LiuWinthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, Little Rock, AR.
Yoav H MessingerDivision of Pediatric Hematology Oncology, Children's Hospitals and Clinics of Minnesota, Minneapolis, MN.
Donald H MahoneyDepartment of Pediatrics, Texas Children's Hospital, Baylor College of Medicine, Houston, TX.
Philip MonteleonePediatric Hematology Oncology, Pediatric Specialists of Lehigh Valley Hospital, Bethlehem, PA.
Eneida R NemecekPediatric Bone Marrow Transplant Program, Oregon Health & Science University, Portland, OR.
Philip A RoehrsDepartment of Pediatrics, University of North Carolina at Chapel Hill, NC.
Reuven J SchoreDivision of Pediatric Oncology, Children's National Medical Center, Washington, DC.
Kimo C StineDepartment of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, AR.
Clifford M TakemotoDepartment of Pediatrics, The Johns Hopkins Hospital, Baltimore, MA.
Jeffrey A ToretskyDepartment of Pediatrics, Georgetown University, Washington, DC.
Joseph F CostelloDepartment of Neurological Surgery, University of California, San Francisco, CA.
Adam B OlshenHelen Diller Family Comprehensive Cancer Center, University of California, San Francisco, CA.
Chip StewartBroad Institute of MIT and Harvard, Cambridge, MA.
Yongjin LiDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN.
Jing MaDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN.
Robert B GerbingDepartment of Statistics, Children's Oncology Group, Monrovia, CA.
Todd A AlonzoKeck School of Medicine, University of Southern California, Los Angeles, CA.
Gad GetzBroad Institute of MIT and Harvard, Cambridge, MA.
Tanja GruberDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN.
Todd GolubBroad Institute of MIT and Harvard, Cambridge, MA.
Kimberly StegmaierBroad Institute of MIT and Harvard, Cambridge, MA.
Mignon L LohDepartment of Pediatrics, Benioff Children's Hospital, University of California, San Francisco, San Francisco, CA.
University of California, San Francisco · USBroad Institute · USSt. Jude Children's Research Hospital · USJohns Hopkins Hospital · USWinthrop Rockefeller Foundation · USBaylor College of Medicine · USCardinal Glennon Children’s Medical Center · USChildren's Hospital of Pittsburgh · USChildren’s Minnesota - St. Paul Hospital · USChildren's National · USChildren's Oncology Group · USEmory University · USGeorgetown University · USHospital for Sick Children · CALehigh University · USOregon Health & Science University · USSeattle Children's Hospital · USStanford Medicine · USTexas Tech University · USUniversity of Arkansas for Medical Sciences · US

Funding

COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
Translational InformaticsP30CA082103 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Kate Taylor Shumate · 1999 to 2026
$209.7M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
Research Training in Childhood CancerT32CA128583 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Eric Alejandro Sweet-Cordero · 2007 to 2026
$6.0M
Mechanisms linking RAS signals to disordered hematopoiesis and myeloid neoplasiaR01CA173085 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BRAUN, BENJAMIN · 2013 to 2017
$1.6M
NCI NIH HHS 1U10CA180899NCI NIH HHS 5P30CA082103NCI NIH HHS 5U10CA098543NCI NIH HHS P30 CA021765NCI NIH HHS P30 CA082103NCI NIH HHS P30CA82103NCI NIH HHS R01 CA173085NCI NIH HHS R01CA173085NCI NIH HHS T32 CA128583NCI NIH HHS T32CA128583NCI NIH HHS U10 CA098543NCI NIH HHS U10 CA180899
6 · The paper itself

Abstract

Juvenile myelomonocytic leukemia (JMML) is a myeloproliferative neoplasm (MPN) of childhood with a poor prognosis. Mutations in NF1, NRAS, KRAS, PTPN11 or CBL occur in 85% of patients, yet there are currently no risk stratification algorithms capable of predicting which patients will be refractory to conventional treatment and could therefore be candidates for experimental therapies. In addition, few molecular pathways aside from the RAS-MAPK pathway have been identified that could serve as the basis for such novel therapeutic strategies. We therefore sought to genomically characterize serial samples from patients at diagnosis through relapse and transformation to acute myeloid leukemia to expand knowledge of the mutational spectrum in JMML. We identified recurrent mutations in genes involved in signal transduction, splicing, Polycomb repressive complex 2 (PRC2) and transcription. Notably, the number of somatic alterations present at diagnosis appears to be the major determinant of outcome.

Indexed as

MutationAcute DiseaseChildChild, PreschoolDisease-Free SurvivalDisease ProgressionDNA Copy Number VariationsFemaleGenetic Predisposition to DiseaseGenome-Wide Association StudyHigh-Throughput Nucleotide SequencingHumansInfantLeukemia, MyeloidLeukemia, Myelomonocytic, JuvenileMale

Identifiers

PMID26457647
PMCPMC4626387
OpenAlexW2162079601

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.