Evidence map›Paper›PMID 26457512›Full record

ArticleActa crystallographica. Section F, Structural biology communications2015

Structure and binding properties of a cameloid nanobody raised against KDM5B.

Anders Wiuf, Line Hyltoft Kristensen, Ole Kristensen, Jerzy Dorosz, Jonas Jensen, Michael Gajhede

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Insights into Comparative Modeling of VInternational journal of molecular sciences · 2021
    Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anders WiufDepartment of Drug Design and Pharmacology, University of Copenhagen, 2200 Copenhagen, Denmark.
Line Hyltoft KristensenDepartment of Drug Design and Pharmacology, University of Copenhagen, 2200 Copenhagen, Denmark.
Ole KristensenDepartment of Drug Design and Pharmacology, University of Copenhagen, 2200 Copenhagen, Denmark.
Jerzy DoroszDepartment of Drug Design and Pharmacology, University of Copenhagen, 2200 Copenhagen, Denmark.
Jonas JensenDepartment of Drug Design and Pharmacology, University of Copenhagen, 2200 Copenhagen, Denmark.
Michael GajhedeDepartment of Drug Design and Pharmacology, University of Copenhagen, 2200 Copenhagen, Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The histone demethylase KDM5B is considered to be a promising target for anticancer therapy. Single-chain antibodies from llama (nanobodies) have been raised to aid in crystallization and structure determination of this enzyme. The antigen-binding properties of 15 of these nanobodies have been characterized. The crystal structure of one of these (NB17) has been determined to a resolution of 1.85 Å. NB17 crystallizes in space group P4322 with six molecules in the asymmetric unit. The six molecules in the asymmetric unit pack as an entity with approximate D3 symmetry with interactions mediated by the CDR loops, which could act as a crystallization nucleus. NB17 does not bind to monomeric KDM5B residues 1-820, but is found to bind to aggregates formed after incubation at 310 K.

Indexed as

Amino Acid SequenceAnimalsCamelusChromatography, GelCrystallizationCrystallography, X-RayHumansJumonji Domain-Containing Histone DemethylasesMolecular Sequence DataNuclear ProteinsProtein BindingRepressor ProteinsSingle-Domain AntibodiesTemperatureJumonji Domain-Containing Histone DemethylasesKDM5B protein, humanNuclear ProteinsRepressor ProteinsSingle-Domain AntibodiesKDM5Bnanobody

Identifiers

PMID26457512
PMCPMC4601585

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.