Evidence map›Paper›PMID 26457128›Full record

ArticleStandards in genomic sciences2015

Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia.

Beng Soon Teh, Nyok-Sean Lau, Fui Ling Ng, Ahmad Yamin Abdul Rahman, Xuehua Wan, Jennifer A Saito, Shaobin Hou, Aik-Hong Teh, Nazalan Najimudin, Maqsudul Alam

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Beng Soon TehCentre for Chemical Biology, Universiti Sains Malaysia, Penang, Malaysia ; Present address: Department of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, Jena, Germany.
Nyok-Sean LauCentre for Chemical Biology, Universiti Sains Malaysia, Penang, Malaysia.
Fui Ling NgSchool of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia.
Ahmad Yamin Abdul RahmanSchool of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia.
Xuehua WanAdvanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, Honolulu, Hawaii USA.
Jennifer A SaitoAdvanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, Honolulu, Hawaii USA.
Shaobin HouAdvanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, Honolulu, Hawaii USA.
Aik-Hong TehCentre for Chemical Biology, Universiti Sains Malaysia, Penang, Malaysia.
Nazalan NajimudinSchool of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia.
Maqsudul AlamAdvanced Studies in Genomics, Proteomics and Bioinformatics, University of Hawaii, Honolulu, Hawaii USA ; Department of Microbiology, University of Hawaii, Honolulu, Hawaii USA.
Universiti Sains Malaysia · MY

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermus sp. strain CCB_US3_UF1 is a thermophilic bacterium of the genus Thermus, a member of the family Thermaceae. Members of the genus Thermus have been widely used as a biological model for structural biology studies and to understand the mechanism of microbial adaptation under thermal environments. Here, we present the complete genome sequence of Thermus sp. CCB_US3_UF1 isolated from a hot spring in Malaysia, which is the fifth member of the genus Thermus with a completely sequenced and publicly available genome (Genbank date of release: December 2, 2011). Thermus sp. CCB_US3_UF1 has the third largest genome within the genus. The complete genome comprises of a chromosome of 2.26 Mb and a plasmid of 19.7 kb. The genome contains 2279 protein-coding and 54 RNA genes. In addition, its genome revealed potential pathways for the synthesis of secondary metabolites (isoprenoid) and pigments (carotenoid).

Indexed as

ExtremophileHot springThermophileThermus

Identifiers

PMID26457128
PMCPMC4599208
OpenAlexW2152916873

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.