Evidence map›Paper›PMID 26456555›Full record

ArticleBiochimica et biophysica acta2016

Global redesign of a native β-barrel scaffold.

Aaron J Wolfe, Mohammad M Mohammad, Avinash K Thakur, Liviu Movileanu

Abstract read
In one paragraph

Article in Biochimica et biophysica acta, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Biological Nanopores: Engineering on Demand.Life (Basel, Switzerland) · 2021
    Review
  3. Article
  4. Article
  5. Article
  6. Detergent Desorption of Membrane Proteins Exhibits Two Kinetic Phases.The journal of physical chemistry letters · 2018
    Article
  7. Quantification of Membrane Protein-Detergent Complex Interactions.The journal of physical chemistry. B · 2017
    Article
  8. Article
  9. Outer membrane protein design.Current opinion in structural biology · 2017
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Aaron J WolfeDepartment of Physics, Syracuse University, 201 Physics Building, Syracuse, NY 13244-1130, USA; Structural Biology, Biochemistry, and Biophysics Program, Syracuse University, 111 College Place, Syracuse, NY 13244-4100, USA.
Mohammad M MohammadDepartment of Physics, Syracuse University, 201 Physics Building, Syracuse, NY 13244-1130, USA.
Avinash K ThakurDepartment of Physics, Syracuse University, 201 Physics Building, Syracuse, NY 13244-1130, USA; Structural Biology, Biochemistry, and Biophysics Program, Syracuse University, 111 College Place, Syracuse, NY 13244-4100, USA.
Liviu MovileanuDepartment of Physics, Syracuse University, 201 Physics Building, Syracuse, NY 13244-1130, USA; Structural Biology, Biochemistry, and Biophysics Program, Syracuse University, 111 College Place, Syracuse, NY 13244-4100, USA; The Syracuse Biomaterials Institute, Syracuse University, 121 Link Hall, Syracuse, NY 13244, USA. Electronic address: lmovilea@syr.edu.

Funding

Engineered Nanopores for Single-Molecule Stochastic SensingR01GM088403 · NIGMS · SYRACUSE UNIVERSITY · PI MOVILEANU, LIVIU · 2009 to 2022
$3.8M
NIGMS NIH HHS R01 GM088403
6 · The paper itself

Abstract

One persistent challenge in membrane protein design is accomplishing extensive modifications of proteins without impairing their functionality. A truncation derivative of the ferric hydroxamate uptake component A (FhuA), which featured the deletion of the 160-residue cork domain and five large extracellular loops, produced the conversion of a non-conductive, monomeric, 22-stranded β-barrel protein into a large-conductance protein pore. Here, we show that this redesigned β-barrel protein tolerates an extensive alteration in the internal surface charge, encompassing 25 negative charge neutralizations. By using single-molecule electrophysiology, we noted that a commonality of various truncation FhuA protein pores was the occurrence of 33% blockades of the unitary current at very high transmembrane potentials. We determined that these current transitions were stimulated by their interaction with an external cationic polypeptide, which occurred in a fashion dependent on the surface charge of the pore interior as well as the polypeptide characteristics. This study shows promise for extensive engineering of a large monomeric β-barrel protein pore in molecular biomedical diagnosis, therapeutics, and biosensor technology.

Indexed as

Amino Acid SequenceBacterial Outer Membrane ProteinsEscherichia coliEscherichia coli ProteinsGene ExpressionIon Channel GatingMembrane PotentialsModels, MolecularMolecular Sequence DataProtein EngineeringProtein FoldingProtein Structure, SecondaryProtein Structure, TertiaryReceptors, VirusRecombinant ProteinsSequence DeletionBacterial Outer Membrane ProteinsEscherichia coli ProteinsFhuA protein, E coliReceptors, VirusRecombinant ProteinsFhuAIon channelMembrane protein engineeringSingle-molecule electrophysiologySpontaneous gating

Identifiers

PMID26456555
PMCPMC4663120

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.