Evidence map›Paper›PMID 26456283›Full record

ArticleAmerican journal of human genetics2015

Amino Acid Variation in HLA Class II Proteins Is a Major Determinant of Humoral Response to Common Viruses.

Christian Hammer, Martin Begemann, Paul J McLaren, István Bartha, Angelika Michel, Beate Klose, Corinna Schmitt, Tim Waterboer, Michael Pawlita, Thomas F Schulz and 2 more

Open access · hybridAbstract readComparative Study
In one paragraph

Article in American journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 1 synthesis or guideline pooled it, 89 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Christian HammerSchool of Life Sciences, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland; Clinical Neuroscience, Max Planck Institute of Experimental Medicine, 37075 Göttingen, Germany. Electronic address: christian.hammer@epfl.ch.
Martin BegemannClinical Neuroscience, Max Planck Institute of Experimental Medicine, 37075 Göttingen, Germany.
Paul J McLarenSchool of Life Sciences, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
István BarthaSchool of Life Sciences, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Angelika MichelDivision of Molecular Diagnostics of Oncogenic Infections, Infections and Cancer Program, German Cancer Research Center, 69120 Heidelberg, Germany.
Beate KloseInstitute of Virology, Hannover Medical School, 30625 Hannover, Germany.
Corinna SchmittInstitute of Virology, Hannover Medical School, 30625 Hannover, Germany.
Tim WaterboerDivision of Molecular Diagnostics of Oncogenic Infections, Infections and Cancer Program, German Cancer Research Center, 69120 Heidelberg, Germany.
Michael PawlitaDivision of Molecular Diagnostics of Oncogenic Infections, Infections and Cancer Program, German Cancer Research Center, 69120 Heidelberg, Germany.
Thomas F SchulzInstitute of Virology, Hannover Medical School, 30625 Hannover, Germany.
Hannelore EhrenreichClinical Neuroscience, Max Planck Institute of Experimental Medicine, 37075 Göttingen, Germany; DFG Research Center for Nanoscale Microscopy and Molecular Physiology of the Brain, 37075 Göttingen, Germany.
Jacques FellaySchool of Life Sciences, École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.
Medizinische Hochschule Hannover · DEHeidelberg University · DEMax Planck Institute of Experimental Medicine · DESIB Swiss Institute of Bioinformatics · CHÉcole Polytechnique Fédérale de Lausanne · CHGerman Cancer Research Center · DENanoscale Microscopy and Molecular Physiology of the Brain Cluster of Excellence 171 — DFG Research Center 103 · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The magnitude of the human antibody response to viral antigens is highly variable. To explore the human genetic contribution to this variability, we performed genome-wide association studies of the immunoglobulin G response to 14 pathogenic viruses in 2,363 immunocompetent adults. Significant associations were observed in the major histocompatibility complex region on chromosome 6 for influenza A virus, Epstein-Barr virus, JC polyomavirus, and Merkel cell polyomavirus. Using local imputation and fine mapping, we identified specific amino acid residues in human leucocyte antigen (HLA) class II proteins as the most probable causal variants underlying these association signals. Common HLA-DRβ1 haplotypes showed virus-specific patterns of humoral-response regulation. We observed an overlap between variants affecting the humoral response to influenza A and EBV and variants previously associated with autoimmune diseases related to these viruses. The results of this study emphasize the central and pathogen-specific role of HLA class II variation in the modulation of humoral immune response to viral antigens in humans.

Indexed as

AdultAutoimmune DiseasesCase-Control StudiesFemaleFollow-Up StudiesGenome-Wide Association StudyHistocompatibility Antigens Class IIHumansImmunity, HumoralImmunocompromised HostImmunoglobulin GMalePolymorphism, Single NucleotidePrognosisProtein ConformationSchizophreniaHistocompatibility Antigens Class IIImmunoglobulin G

Identifiers

PMID26456283
PMCPMC4667104
OpenAlexW1952476462

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.