Evidence map›Paper›PMID 26454273›Full record

ArticleBioinformatics (Oxford, England)2016

Jflow: a workflow management system for web applications.

Jérôme Mariette, Frédéric Escudié, Philippe Bardou, Ibouniyamine Nabihoudine, Céline Noirot, Marie-Stéphane Trotard, Christine Gaspin, Christophe Klopp

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Cancers · 2020
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jérôme MariettePlate-forme Bio-informatique Genotoul, INRA, UR875 Mathmatiques et Informatique Appliques Toulouse, Castanet-Tolosan, France and.
Frédéric EscudiéPlate-forme Bio-informatique Genotoul, INRA, UR875 Mathmatiques et Informatique Appliques Toulouse, Castanet-Tolosan, France and.
Philippe BardouPlate-forme SIGENAE, INRA, GenPhyse, Castanet-Tolosan Cedex, France.
Ibouniyamine NabihoudinePlate-forme Bio-informatique Genotoul, INRA, UR875 Mathmatiques et Informatique Appliques Toulouse, Castanet-Tolosan, France and.
Céline NoirotPlate-forme Bio-informatique Genotoul, INRA, UR875 Mathmatiques et Informatique Appliques Toulouse, Castanet-Tolosan, France and.
Marie-Stéphane TrotardPlate-forme Bio-informatique Genotoul, INRA, UR875 Mathmatiques et Informatique Appliques Toulouse, Castanet-Tolosan, France and.
Christine GaspinPlate-forme Bio-informatique Genotoul, INRA, UR875 Mathmatiques et Informatique Appliques Toulouse, Castanet-Tolosan, France and.
Christophe KloppPlate-forme Bio-informatique Genotoul, INRA, UR875 Mathmatiques et Informatique Appliques Toulouse, Castanet-Tolosan, France and Plate-forme SIGENAE, INRA, GenPhyse, Castanet-Tolosan Cedex, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

summaryBiologists produce large data sets and are in demand of rich and simple web portals in which they can upload and analyze their files. Providing such tools requires to mask the complexity induced by the needed High Performance Computing (HPC) environment. The connection between interface and computing infrastructure is usually specific to each portal. With Jflow, we introduce a Workflow Management System (WMS), composed of jQuery plug-ins which can easily be embedded in any web application and a Python library providing all requested features to setup, run and monitor workflows. AVAILABILITY AND IMPLEMENTATION: Jflow is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/jflow. The package is coming with full documentation, quick start and a running test portal. CONTACT: Jerome.Mariette@toulouse.inra.fr.

Indexed as

Database Management SystemsInformation Storage and RetrievalInternetSoftwareComputational BiologyDatabases, FactualHumansWorkflow

Identifiers

PMID26454273
PMCPMC5859998

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.