Evidence map›Paper›PMID 26454174›Full record

ArticleBiochemical and biophysical research communications2015

Molecular dissection of a putative iron reductase from Desulfotomaculum reducens MI-1.

Zhi Li, David D Kim, Ornella D Nelson, Anne E Otwell, Ruth E Richardson, Stephen J Callister, Hening Lin

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Role ofApplied and environmental microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Zhi LiDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
David D KimDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Ornella D NelsonDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA.
Anne E OtwellDepartment of Microbiology, Cornell University, Ithaca, NY 14853, USA.
Ruth E RichardsonSchool of Civil and Environmental Engineering, Cornell University, Ithaca, NY 14853, USA.
Stephen J CallisterPacific Northwest National Laboratory, Richland, WA 99354, USA.
Hening LinDepartment of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA; Howard Hughes Medical Institute, USA. Electronic address: hl379@cornell.edu.

Funding

CHEMISTRY OF BIOLOGICAL SYSTEMST32GM008500 · NIGMS · CORNELL UNIVERSITY ITHACA · PI LIN, HENING · 1996 to 2020
$5.4M
NIGMS NIH HHS 5T32GM008500NIGMS NIH HHS T32 GM008500
6 · The paper itself

Abstract

Desulfotomaculum reducens MI-1 is a Firmicute strain capable of reducing a variety of heavy metal ions and has a great potential in heavy metal bioremediation. We recently identified Dred_2421 as a potential iron reductase through proteomic study of D. reducens. The current study examines its iron-reduction mechanism. Dred_2421, like its close homolog from Escherichia coli (2, 4-dienoyl-CoA reductase), has an FMN-binding N-terminal domain (NTD), an FAD-binding C-terminal domain (CTD), and a 4Fe-4S cluster between the two domains. To understand the mechanism of the iron-reduction activity and the role of each domain, we generated a series of variants for each domain and investigated their iron-reduction activity. Our results suggest that CTD is the main contributor of the iron-reduction activity, and that NTD and the 4Fe-4S cluster are not directly involved in such activity. This study provides a mechanistic understanding of the iron-reductase activity of Dred_2421 and may also help to elucidate other physiological activities this enzyme may have.

Indexed as

DesulfotomaculumFMN Reductaseferric citrate iron reductaseFMN ReductaseDesulfotomaculumIron reductionNADHNADH:Flavin oxidoreductaseOld yellow enzymespfam00724

Identifiers

PMID26454174
PMCPMC4649440

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.