Evidence map›Paper›PMID 26453653›Full record

ArticleEukaryotic cell2015

Depletion of UBC9 Causes Nuclear Defects during the Vegetative and Sexual Life Cycles in Tetrahymena thermophila.

Qianyi Yang, Amjad M Nasir, Robert S Coyne, James D Forney

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Qianyi YangDepartment of Biochemistry, Purdue University, West Lafayette, Indiana, USA.
Amjad M NasirDepartment of Biochemistry, Purdue University, West Lafayette, Indiana, USA.
Robert S CoyneJ. Craig Venter Institute, Microbial and Environmental Genomics, Rockville, Maryland, USA.
James D ForneyDepartment of Biochemistry, Purdue University, West Lafayette, Indiana, USA forney@purdue.edu.
Purdue University West Lafayette · USJ. Craig Venter Institute · US

Funding

A RESOURCE CENTER FOR TETRAHYMENA THERMOPHILAP40RR019688 · NCRR · CORNELL UNIVERSITY ITHACA · PI CLARK, THEODORE G · 2005 to 2011
$2.3M
High-throughput Gene Knockout Production in Tetrahymena thermophilaR24GM089662 · NIGMS · J. CRAIG VENTER INSTITUTE, INC. · PI COYNE, ROBERT STEPHEN · 2010 to 2012
$1.1M
NCRR NIH HHS 2 P40 RR019688-05NCRR NIH HHS P40 RR019688NIGMS NIH HHS GM089662NIGMS NIH HHS R24 GM089662
6 · The paper itself

Abstract

Ubc9p is the sole E2-conjugating enzyme for SUMOylation, and its proper function is required for regulating key nuclear events such as transcription, DNA repair, and mitosis. In Tetrahymena thermophila, the genome is separated into a diploid germ line micronucleus (MIC) that divides by mitosis and a polyploid somatic macronucleus (MAC) that divides amitotically. This unusual nuclear organization provides novel opportunities for the study of SUMOylation and Ubc9p function. We identified the UBC9 gene and demonstrated that its complete deletion from both MIC and MAC genomes is lethal. Rescue of the lethal phenotype with a GFP-UBC9 fusion gene driven by a metallothionein promoter generated a cell line with CdCl2-dependent expression of green fluorescent protein (GFP)-Ubc9p. Depletion of Ubc9p in vegetative cells resulted in the loss of MICs, but MACs continued to divide. In contrast, expression of catalytically inactive Ubc9p resulted in the accumulation of multiple MICs. Critical roles for Ubc9p were also identified during the sexual life cycle of Tetrahymena. Cell lines that were depleted for Ubc9p did not form mating pairs and therefore could not complete any of the subsequent stages of conjugation, including meiosis and macronuclear development. Mating between cells expressing catalytically inactive Ubc9p resulted in arrest during macronuclear development, consistent with our observation that Ubc9p accumulates in the developing macronucleus.

Indexed as

Gene DeletionLife Cycle StagesAmino Acid SequenceCell LineCell NucleusDNA DamageGene Knockout TechniquesGenes, DominantGenes, EssentialHomologous RecombinationMicronucleus, GermlineMolecular Sequence DataSequence AlignmentTetrahymena thermophilaUbiquitin-Conjugating EnzymesUbiquitin-Conjugating Enzyme UBC9Ubiquitin-Conjugating EnzymesUbiquitin-Conjugating Enzyme UBC9

Identifiers

PMID26453653
PMCPMC4664876
OpenAlexW2185005460

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.