Evidence map›Paper›PMID 26453652›Full record

ArticleEukaryotic cell2015

Characterization of a Novel Prevacuolar Compartment in Neurospora crassa.

Barry J Bowman, Marija Draskovic, Robert R Schnittker, Tarik El-Mellouki, Michael D Plamann, Eddy Sánchez-León, Meritxell Riquelme, Emma Jean Bowman

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Off the wall: The rhyme and reason ofCell surface (Amsterdam, Netherlands) · 2019
    Review
  5. Frontiers in microbiology · 2019
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Barry J BowmanDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, California, USA bbowman@ucsc.edu.
Marija DraskovicDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, California, USA.
Robert R SchnittkerSchool of Biological Sciences, University of Missouri-Kansas City, Kansas City, Missouri, USA.
Tarik El-MelloukiSchool of Biological Sciences, University of Missouri-Kansas City, Kansas City, Missouri, USA.
Michael D PlamannSchool of Biological Sciences, University of Missouri-Kansas City, Kansas City, Missouri, USA.
Eddy Sánchez-LeónDepartment of Microbiology, Center for Scientific Research and Higher Education of Ensenada (CICESE), Ensenada, Baja California, Mexico.
Meritxell RiquelmeDepartment of Microbiology, Center for Scientific Research and Higher Education of Ensenada (CICESE), Ensenada, Baja California, Mexico.
Emma Jean BowmanDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Cruz, California, USA.
University of California, Santa Cruz · USUniversity of Missouri–Kansas City · USCenter for Scientific Research and Higher Education at Ensenada · MX

Funding

UNIVERSITY OF CALIFORNIA, SANTA CRUZ IMSD PROGRAMR25GM058903 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI JURICA, MELISSA S · 1999 to 2019
$12.2M
NIGMS NIH HHS GM058903NIGMS NIH HHS R25 GM058903
6 · The paper itself

Abstract

Using confocal microscopy, we observed ring-like organelles, similar in size to nuclei, in the hyphal tip of the filamentous fungus Neurospora crassa. These organelles contained a subset of vacuolar proteins. We hypothesize that they are novel prevacuolar compartments (PVCs). We examined the locations of several vacuolar enzymes and of fluorescent compounds that target the vacuole. Vacuolar membrane proteins, such as the vacuolar ATPase (VMA-1) and the polyphosphate polymerase (VTC-4), were observed in the PVCs. A pigment produced by adenine auxotrophs, used to visualize vacuoles, also accumulated in PVCs. Soluble enzymes of the vacuolar lumen, alkaline phosphatase and carboxypeptidase Y, were not observed in PVCs. The fluorescent molecule Oregon Green 488 carboxylic acid diacetate, succinimidyl ester (carboxy-DFFDA) accumulated in vacuoles and in a subset of PVCs, suggesting maturation of PVCs from the tip to distal regions. Three of the nine Rab GTPases in N. crassa, RAB-2, RAB-4, and RAB-7, localized to the PVCs. RAB-2 and RAB-4, which have similar amino acid sequences, are present in filamentous fungi but not in yeasts, and no function has previously been reported for these Rab GTPases in fungi. PVCs are highly pleomorphic, producing tubular projections that subsequently become detached. Dynein and dynactin formed globular clusters enclosed inside the lumen of PVCs. The size, structure, dynamic behavior, and protein composition of the PVCs appear to be significantly different from those of the well-studied prevacuolar compartment of yeasts.

Indexed as

Cell CompartmentationAdenineAdenosine TriphosphatasesDynactin ComplexEndoplasmic ReticulumFungal ProteinsHyphaeMicroscopy, ConfocalMicrotubule-Associated ProteinsNeurospora crassaNuclear EnvelopePigments, BiologicalProtein Transportrab GTP-Binding ProteinsRecombinant Fusion ProteinsSolubilityAdenineAdenosine TriphosphatasesDynactin ComplexFungal ProteinsMicrotubule-Associated ProteinsPigments, Biologicalrab GTP-Binding ProteinsRecombinant Fusion Proteins

Identifiers

PMID26453652
PMCPMC4664880
OpenAlexW2247553309

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.