Evidence map›Paper›PMID 26452363›Full record

ArticleImmunogenetics2015

Isolation and characterization of major histocompatibility complex class II B genes in cranes.

Tetsuo I Kohyama, Takuya Akiyama, Chizuko Nishida, Kazutoshi Takami, Manabu Onuma, Kunikazu Momose, Ryuichi Masuda

Abstract read
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In one paragraph

Article in Immunogenetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Tetsuo I KohyamaDepartment of Natural History Sciences, Faculty of Science, Hokkaido University, N10W8, Kita-ku, Sapporo, Hokkaido, 060-0810, Japan.
Takuya AkiyamaDepartment of Natural History Sciences, Faculty of Science, Hokkaido University, N10W8, Kita-ku, Sapporo, Hokkaido, 060-0810, Japan.
Chizuko NishidaDepartment of Natural History Sciences, Faculty of Science, Hokkaido University, N10W8, Kita-ku, Sapporo, Hokkaido, 060-0810, Japan.
Kazutoshi TakamiOsaka Municipal Tennoji Zoological Gardens, 1-108, Chausuyama-cho, Tennoji-ku, Osaka, Osaka, 543-0063, Japan.
Manabu OnumaEcological Genetics Analysis Section, Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, 16-2, Onogawa, Tsukuba, Ibaraki, 305-8506, Japan.
Kunikazu MomoseRed-crowned Crane Conservancy, Wakatake-cho, Kushiro, Hokkaido, 085-0036, Japan.
Ryuichi MasudaDepartment of Natural History Sciences, Faculty of Science, Hokkaido University, N10W8, Kita-ku, Sapporo, Hokkaido, 060-0810, Japan. masudary@mail.sci.hokudai.ac.jp.
Hokkaido University · JPNational Institute for Environmental Studies · JPOsaka Science Museum · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we isolated and characterized the major histocompatibility complex (MHC) class II B genes in cranes. Genomic sequences spanning exons 1 to 4 were amplified and determined in 13 crane species and three other species closely related to cranes. In all, 55 unique sequences were identified, and at least two polymorphic MHC class II B loci were found in most species. An analysis of sequence polymorphisms showed the signature of positive selection and recombination. A phylogenetic reconstruction based on exon 2 sequences indicated that trans-species polymorphism has persisted for at least 10 million years, whereas phylogenetic analyses of the sequences flanking exon 2 revealed a pattern of concerted evolution. These results suggest that both balancing selection and recombination play important roles in the crane MHC evolution.

Indexed as

Evolution, MolecularAnimalsBirdsExonsHistocompatibility Antigens Class IIPhylogenyPolymorphism, GeneticRecombination, GeneticSelection, GeneticSpecies SpecificityHistocompatibility Antigens Class IIAvesConcerted evolutionGruiformesMHCTrans-species polymorphism

Identifiers

PMID26452363
OpenAlexW1952573282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.