Evidence map›Paper›PMID 26452058›Full record

ArticlePLoS genetics2015

ACLY and ACC1 Regulate Hypoxia-Induced Apoptosis by Modulating ETV4 via α-ketoglutarate.

Melissa M Keenan, Beiyu Liu, Xiaohu Tang, Jianli Wu, Derek Cyr, Robert D Stevens, Olga Ilkayeva, Zhiqing Huang, Laura A Tollini, Susan K Murphy and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 45 citations in OpenAlex.

  1. Trial
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  7. Article
  8. Article
  9. Article
  10. Genetics Responses to Hypoxia and Reoxygenation Stress inAnimals : an open access journal from MDPI · 2021
    Article
  11. Review
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  13. Article
  14. Review
  15. Article
  16. Article
  17. The vital role of ATP citrate lyase in chronic diseases.Journal of molecular medicine (Berlin, Germany) · 2020
    Review
  18. Review
  19. Article
  20. Exome sequencing in 51 early onset non-familial CRC cases.Molecular genetics & genomic medicine · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Melissa M KeenanDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America; Center for Genomic and Computational Biology, Duke University Medical Center, Durham, North Carolina, United States of America.
Beiyu LiuDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America; Center for Genomic and Computational Biology, Duke University Medical Center, Durham, North Carolina, United States of America.
Xiaohu TangDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America; Center for Genomic and Computational Biology, Duke University Medical Center, Durham, North Carolina, United States of America.
Jianli WuDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America; Center for Genomic and Computational Biology, Duke University Medical Center, Durham, North Carolina, United States of America.
Derek CyrDepartment of Electrical and Computer Engineering, Duke University Medical Center, Durham, North Carolina, United States of America.
Robert D StevensSarah W Stedman Nutrition and Metabolism Center, Duke University Medical Center, Durham, North Carolina, United States of America; Duke Institute of Molecular Physiology, Duke University Medical Center, Durham, North Carolina, United States of America.
Olga IlkayevaSarah W Stedman Nutrition and Metabolism Center, Duke University Medical Center, Durham, North Carolina, United States of America; Duke Institute of Molecular Physiology, Duke University Medical Center, Durham, North Carolina, United States of America.
Zhiqing HuangDepartment of Obstetrics and Gynecology, Division of Gynecologic Oncology, Duke University Medical Center, Durham, North Carolina, United States of America.
Laura A TolliniDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America; Center for Genomic and Computational Biology, Duke University Medical Center, Durham, North Carolina, United States of America.
Susan K MurphyDepartment of Obstetrics and Gynecology, Division of Gynecologic Oncology, Duke University Medical Center, Durham, North Carolina, United States of America.
Joseph LucasDepartment of Electrical and Computer Engineering, Duke University Medical Center, Durham, North Carolina, United States of America.
Deborah M MuoioSarah W Stedman Nutrition and Metabolism Center, Duke University Medical Center, Durham, North Carolina, United States of America; Duke Institute of Molecular Physiology, Duke University Medical Center, Durham, North Carolina, United States of America.
So Young KimDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America.
Jen-Tsan ChiDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina, United States of America; Center for Genomic and Computational Biology, Duke University Medical Center, Durham, North Carolina, United States of America.
Duke Medical Center · USDuke University Hospital · USDuke University · US

Funding

ORGANIZATION AND FUNCTIONS OF CELLULAR STRUCTUREST32GM007184 · NIGMS · DUKE UNIVERSITY · PI JINKS-ROBERTSON, SUE · 1985 to 2019
$18.2M
Genetics Training Grant-Year 26T32GM007754 · NIGMS · DUKE UNIVERSITY · PI HAASE, STEVEN B · 1985 to 2019
$8.3M
Role of Carnitine Acetyltransferase in Mitochondrial and Metabolic FunctionR01DK089312 · NIDDK · DUKE UNIVERSITY · PI DEBORAH M MUOIO · 2010 to 2026
$7.8M
Gene expression programs of lactic acidosis in human cancersR01CA125618 · NCI · DUKE UNIVERSITY · PI CHI, JEN-TSAN ASHLEY · 2007 to 2016
$3.3M
Oncogenic Gene Regulatory NetworksR01CA106520 · NCI · DUKE UNIVERSITY · PI CHI, JEN-TSAN ASHLEY · 2005 to 2014
$2.9M
Genetic elements of cancer cell survival in tumor microenvironment stressesF31CA180610 · NCI · DUKE UNIVERSITY · PI KEENAN, MELISSA M · 2013 to 2015
$82k
NCI NIH HHS CA106520NCI NIH HHS CA125618NCI NIH HHS CA180610NCI NIH HHS F31 CA180610NCI NIH HHS R01 CA106520NCI NIH HHS R01 CA125618NIDDK NIH HHS 1R01DK089312NIDDK NIH HHS R01 DK089312NIGMS NIH HHS T32 GM007184NIGMS NIH HHS T32 GM007754
6 · The paper itself

Abstract

In order to propagate a solid tumor, cancer cells must adapt to and survive under various tumor microenvironment (TME) stresses, such as hypoxia or lactic acidosis. To systematically identify genes that modulate cancer cell survival under stresses, we performed genome-wide shRNA screens under hypoxia or lactic acidosis. We discovered that genetic depletion of acetyl-CoA carboxylase (ACACA or ACC1) or ATP citrate lyase (ACLY) protected cancer cells from hypoxia-induced apoptosis. Additionally, the loss of ACLY or ACC1 reduced levels and activities of the oncogenic transcription factor ETV4. Silencing ETV4 also protected cells from hypoxia-induced apoptosis and led to remarkably similar transcriptional responses as with silenced ACLY or ACC1, including an anti-apoptotic program. Metabolomic analysis found that while α-ketoglutarate levels decrease under hypoxia in control cells, α-ketoglutarate is paradoxically increased under hypoxia when ACC1 or ACLY are depleted. Supplementation with α-ketoglutarate rescued the hypoxia-induced apoptosis and recapitulated the decreased expression and activity of ETV4, likely via an epigenetic mechanism. Therefore, ACC1 and ACLY regulate the levels of ETV4 under hypoxia via increased α-ketoglutarate. These results reveal that the ACC1/ACLY-α-ketoglutarate-ETV4 axis is a novel means by which metabolic states regulate transcriptional output for life vs. death decisions under hypoxia. Since many lipogenic inhibitors are under investigation as cancer therapeutics, our findings suggest that the use of these inhibitors will need to be carefully considered with respect to oncogenic drivers, tumor hypoxia, progression and dormancy. More broadly, our screen provides a framework for studying additional tumor cell stress-adaption mechanisms in the future.

Indexed as

Acetyl-CoA CarboxylaseAdenovirus E1A ProteinsApoptosisATP Citrate (pro-S)-LyaseCell HypoxiaCell Line, TumorGene Expression Regulation, NeoplasticHumansKetoglutaric AcidsNeoplasmsProto-Oncogene ProteinsProto-Oncogene Proteins c-etsTumor MicroenvironmentACACA protein, humanAcetyl-CoA CarboxylaseAdenovirus E1A ProteinsATP Citrate (pro-S)-LyaseETV4 protein, humanKetoglutaric AcidsProto-Oncogene ProteinsProto-Oncogene Proteins c-ets

Identifiers

PMID26452058
PMCPMC4599891
OpenAlexW2229607676

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.