Evidence map›Paper›PMID 26451951›Full record

ArticlePLoS genetics2015

Type IV Collagen Controls the Axogenesis of Cerebellar Granule Cells by Regulating Basement Membrane Integrity in Zebrafish.

Miki Takeuchi, Shingo Yamaguchi, Shigenobu Yonemura, Kisa Kakiguchi, Yoshikatsu Sato, Tetsuya Higashiyama, Takashi Shimizu, Masahiko Hibi

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Identification of unique α4 chain structure and conserved antiangiogenic activity of α3NC1 type IV collagen in zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2023
    Article
  8. An 18-month-old with white matter calcifications and seizures.Brain pathology (Zurich, Switzerland) · 2022
    Article
  9. Article
  10. Elevated TGFβ signaling contributes to ocular anterior segment dysgenesis in Col4a1 mutant mice.Matrix biology : journal of the International Society for Matrix Biology · 2022
    Article
  11. Neuronal Phenotype ofInternational journal of molecular sciences · 2022
    Article
  12. Cerebrovascular development: mechanisms and experimental approaches.Cellular and molecular life sciences : CMLS · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Miki TakeuchiLaboratory of Organogenesis and Organ Function, Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, Japan.
Shingo YamaguchiDevision of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Aichi, Japan.
Shigenobu YonemuraUltrastructural Research Team, RIKEN Center for Life Science Technologies, Kobe, Hyogo, Japan.
Kisa KakiguchiUltrastructural Research Team, RIKEN Center for Life Science Technologies, Kobe, Hyogo, Japan.
Yoshikatsu SatoInstitute of Transformative Bio-Molecules, Nagoya University, Nagoya, Aichi, Japan.
Tetsuya HigashiyamaInstitute of Transformative Bio-Molecules, Nagoya University, Nagoya, Aichi, Japan.
Takashi ShimizuLaboratory of Organogenesis and Organ Function, Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, Japan; Devision of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Aichi, Japan.
Masahiko HibiLaboratory of Organogenesis and Organ Function, Bioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, Japan; Devision of Biological Science, Graduate School of Science, Nagoya University, Nagoya, Aichi, Japan.
Nagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Granule cells (GCs) are the major glutamatergic neurons in the cerebellum, and GC axon formation is an initial step in establishing functional cerebellar circuits. In the zebrafish cerebellum, GCs can be classified into rostromedial and caudolateral groups, according to the locations of their somata in the corresponding cerebellar lobes. The axons of the GCs in the caudolateral lobes terminate on crest cells in the dorsal hindbrain, as well as forming en passant synapses with Purkinje cells in the cerebellum. In the zebrafish mutant shiomaneki, the caudolateral GCs extend aberrant axons. Positional cloning revealed that the shiomaneki (sio) gene locus encodes Col4a6, a subunit of type IV collagen, which, in a complex with Col4a5, is a basement membrane (BM) component. Both col4a5 and col4a6 mutants displayed similar abnormalities in the axogenesis of GCs and retinal ganglion cells (RGCs). Although type IV collagen is reported to control axon targeting by regulating the concentration gradient of an axonal guidance molecule Slit, Slit overexpression did not affect the GC axons. The structure of the BM surrounding the tectum and dorsal hindbrain was disorganized in the col4a5 and col4a6 mutants. Moreover, the abnormal axogenesis of the caudolateral GCs and the RGCs was coupled with aberrant BM structures in the type IV collagen mutants. The regrowth of GC axons after experimental ablation revealed that the original and newly formed axons displayed similar branching and extension abnormalities in the col4a6 mutants. These results collectively suggest that type IV collagen controls GC axon formation by regulating the integrity of the BM, which provides axons with the correct path to their targets.

Indexed as

AnimalsAxonsBasement MembraneCerebellumCollagen Type IVExtracellular MatrixNerve Tissue ProteinsPurkinje CellsRetinal Ganglion CellsZebrafishZebrafish ProteinsCollagen Type IVNerve Tissue Proteinsslit1a protein, zebrafishZebrafish Proteins

Identifiers

PMID26451951
PMCPMC4599943
OpenAlexW1828178306

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.