Evidence map›Paper›PMID 26451771›Full record

ArticleEuropean journal of medicinal chemistry2015

Synthesis of dihydropyrimidine α,γ-diketobutanoic acid derivatives targeting HIV integrase.

Ozkan Sari, Vincent Roy, Mathieu Métifiot, Christophe Marchand, Yves Pommier, Stéphane Bourg, Pascal Bonnet, Raymond F Schinazi, Luigi A Agrofoglio

Open access · greenAbstract read
In one paragraph

Article in European journal of medicinal chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Novel Steroidal[17,16-Molecules (Basel, Switzerland) · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Ozkan SariUniv. Orléans et CNRS, ICOA, UMR 7311, F-45067, Orléans, France.
Vincent RoyUniv. Orléans et CNRS, ICOA, UMR 7311, F-45067, Orléans, France.
Mathieu MétifiotDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, 20892, USA.
Christophe MarchandDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, 20892, USA.
Yves PommierDevelopmental Therapeutics Branch, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, MD, 20892, USA.
Stéphane BourgUniv. Orléans et CNRS, ICOA, UMR 7311, F-45067, Orléans, France; CNRS, CBM, UPR 4301, Univ. Orléans, F-45071, Orléans, France.
Pascal BonnetUniv. Orléans et CNRS, ICOA, UMR 7311, F-45067, Orléans, France.
Raymond F SchinaziCenter for AIDS Research, Laboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine and Veterans Affairs Medical Center, Atlanta, GA, 30322, USA.
Luigi A AgrofoglioUniv. Orléans et CNRS, ICOA, UMR 7311, F-45067, Orléans, France. Electronic address: luigi.agrofoglio@univ-orleans.fr.
Centre National de la Recherche Scientifique · FRCenter for Cancer Research · USUniversité d'Orléans · FRJohns Hopkins University Center for AIDS ResearchNational Cancer Institute · US

Funding

Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Carlos del Rio · 2002 to 2026
$74.0M
Pharmacology of HIV Viral DNA & Retroviral IntegrasesZIABC007333 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI POMMIER, YVES · 2009 to 2019
$5.2M
PHARMACOLOGY OF THE HIV VIRAL DNA AND RETROVIRAL INTEGRASESZ01BC007333 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI POMMIER, YVES · 1996 to 2008
$1.0M
Intramural NIH HHS Z01 BC007333Intramural NIH HHS Z99 CA999999NCI NIH HHS Z01 BC 007333-09LMPNIAID NIH HHS 5P30-AI-50409NIAID NIH HHS P30 AI050409
6 · The paper itself

Abstract

The synthesis and antiviral evaluation of a series of dihydropyrimidinone and thiopyrimidine derivatives bearing aryl α,γ-diketobutanoic acid moiety are described using the Biginelli multicomponent reaction as key step. The most active among 20 synthesized novel compounds were 4c, 4d and 5b, which possess nanomolar HIV-1 integrase (IN) stand transfer (ST) inhibition activities. In order to understand their mode of interactions within the IN active site, we docked all the compounds into the previously reported X-ray crystal structure of IN. We observed that compounds 4c, 4d and 5b occupied an area close to the two catalytic Mg(2+) ions surrounded by their chelating triad (E221, D128 and D185), DC16, Y212 and the β-diketo acid moiety of 4c, 4d and 5b chelating Mg(2+). As those compounds lack anti-HIV activities in cell, their prodrugs were synthetized. The prodrug 4c' exhibited an anti-HIV activity of 0.19 μM in primary human lymphocytes with some cytotoxicity. All together, these results indicate that the new analogs potentially interact within the catalytic site with highly conserved residues important for IN catalytic activity.

Indexed as

AnimalsAnti-HIV AgentsButyric AcidCell Line, TumorCell ProliferationCell SurvivalChlorocebus aethiopsDose-Response Relationship, DrugHIV-1HIV IntegraseHIV Integrase InhibitorsHumansModels, MolecularMolecular StructurePyrimidinesStructure-Activity RelationshipAnti-HIV AgentsButyric Aciddihydropyrimidine alpha,gamma-diketobutanoic acidHIV IntegraseHIV Integrase InhibitorsPyrimidinesAntiviral activityDihydropyrimidine α,γ-diketobutanoic acidDocking analysisIntegrase-HIVSynthesis

Identifiers

PMID26451771
PMCPMC4629473
OpenAlexW2103849116

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.