Evidence map›Paper›PMID 26451733›Full record

ArticlePLoS genetics2015

Parent-of-Origin Effects of the APOB Gene on Adiposity in Young Adults.

Hagit Hochner, Catherine Allard, Einat Granot-Hershkovitz, Jinbo Chen, Colleen M Sitlani, Sandra Sazdovska, Thomas Lumley, Barbara McKnight, Kenneth Rice, Daniel A Enquobahrie and 15 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  4. Maternal-fetal genetic interactions, imprinting, and risk of placental abruption.The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 13 institutions in 5 countries.

Hagit HochnerBraun School of Public Health, Hebrew University-Hadassah Medical Center, Jerusalem, Israel.
Catherine AllardDépartement de Mathématiques, Université de Sherbrooke and Centre de Recherche du Centre Hospitalier Universitaire de Sherbrooke, Sherbrooke, Quebec, Canada.
Einat Granot-HershkovitzBraun School of Public Health, Hebrew University-Hadassah Medical Center, Jerusalem, Israel.
Jinbo ChenDepartment of Biostatistics and Epidemiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.
Colleen M SitlaniDepartment of Medicine, University of Washington, Seattle, Washington, United States of America; Cardiovascular Health Research Unit, University of Washington, Seattle, Washington, United States of America.
Sandra SazdovskaBraun School of Public Health, Hebrew University-Hadassah Medical Center, Jerusalem, Israel.
Thomas LumleyDepartment of Statistics, University of Auckland, Auckland, New Zealand.
Barbara McKnightDepartment of Biostatistics, University of Washington, Seattle, Washington, United States of America.
Kenneth RiceDepartment of Biostatistics, University of Washington, Seattle, Washington, United States of America.
Daniel A EnquobahrieDepartment of Epidemiology, University of Washington, Seattle, Washington, United States of America.
James B MeigsHarvard Medical School and General Medicine Division, Massachusetts General Hospital, Boston, Massachusetts, United States of America.
Pui KwokInstitute of Human Genetics, University of California, San Francisco, California, United States of America; Cardiovascular Research Institute, University of California, San Francisco, California, United States of America; Department of Dermatology, University of California, San Francisco, California, United States of America.
Marie-France HivertDepartment of Population Medicine, Harvard Pilgrim Health Care Institute, Boston, Massachusetts, United States of America.
Ingrid B BoreckiDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Felicia GomezDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Ting WangDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Cornelia van DuijnGenetic Epidemiology Unit, Department of Epidemiology, Erasmus Medical Center, University Medical Center, Rotterdam, the Netherlands.
Najaf AminGenetic Epidemiology Unit, Department of Epidemiology, Erasmus Medical Center, University Medical Center, Rotterdam, the Netherlands.
Jerome I RotterInstitute for Translational Genomics and Population Sciences and Department of Pediatrics, Los Angeles BioMedical Research Institute at Harbor-UCLA Medical Center, Torrance, California, United States of America.
John StamatoyannopoulosDepartment of Medicine, University of Washington, Seattle, Washington, United States of America; Department of Genome Sciences, University of Washington, Seattle, Washington, United States of America.
Vardiella MeinerDepartment of Genetics and Metabolism, Hebrew University-Hadassah Medical Center, Jerusalem, Israel.
Orly ManorBraun School of Public Health, Hebrew University-Hadassah Medical Center, Jerusalem, Israel.
Josée DupuisDepartment of Biostatistics, Boston University School of Public Health, Boston, Massachusetts, United States of America.
Yechiel FriedlanderBraun School of Public Health, Hebrew University-Hadassah Medical Center, Jerusalem, Israel.
David S SiscovickNew York Academy of Medicine, New York, New York, United States of America.
Hadassah Medical Center · ILUniversity of Washington · USWashington University in St. Louis · USErasmus MC · NLBoston University · USHarvard Pilgrim Health Care · USMassachusetts General Hospital · USNew York Academy of Medicine · USThe Lundquist Institute · USUniversité de Sherbrooke · CAUniversity of Auckland · NZUniversity of California, San Francisco · USUniversity of Pennsylvania · US

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Andrea L Hevener · 2003 to 2026
$40.4M
CHARGE Consortium: Omics Discovery for CVD and Aging PhenotypesR01HL105756 · NHLBI · UNIVERSITY OF WASHINGTON · PI Bruce M Psaty, NICHOLAS L SMITH · 2011 to 2026
$9.5M
Common Genetic Variation and Quantitative Diabetes TraitsR01DK078616 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MEIGS, JAMES B · 2008 to 2014
$5.0M
RESEARCH EDUCATION PROGRAM ON COMPUTATIONAL AND STATISTICAL TOOL DEVELOPMENT FOR ADDICTION GENETICSR25DA027995 · NIDA · WASHINGTON UNIVERSITY · PI MADDEN, PAMELA ANN, RICE, JOHN P. · 2009 to 2019
$4.3M
Rare Sequence Variation and Diabetes Quantitative TraitsU01DK078616 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MEIGS, JAMES B · 2015 to 2019
$3.6M
DECODING THE IMPACT OF TRANSPOSABLE ELEMENTS ON GENE REGULATIONR01HG007175 · NHGRI · WASHINGTON UNIVERSITY · PI WANG, TING · 2014 to 2021
$2.7M
The WashU 4DN Network Data Coordination and Integration CenterU01CA200060 · NCI · WASHINGTON UNIVERSITY · PI WANG, TING · 2015 to 2019
$1.9M
Epidemiology of Precursors to Type 2 DiabetesK24DK080140 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MEIGS, JAMES B · 2007 to 2016
$1.9M
Maternal Obesity, Fetal Genomics, and Atherosclerotic Metabolic RiskR01HL088884 · NHLBI · UNIVERSITY OF WASHINGTON · PI SISCOVICK, DAVID STUART · 2006 to 2009
$1.7M
ADVANCED EPI/GENOME BROWSER WITH ENHANCED VISUALIZATION AND ANALYSIS TOOLSR01HG007354 · NHGRI · WASHINGTON UNIVERSITY · PI WANG, TING · 2013 to 2016
$1.5M
CHARTING THE EPIGENOMIC LANDSCAPE OF HUMAN TRANSPOSABLE ELEMENTSR01ES024992 · NIEHS · WASHINGTON UNIVERSITY · PI WANG, TING · 2014 to 2015
$342k
NCATS NIH HHS UL1 TR000124NCI NIH HHS U01 CA200060NHGRI NIH HHS R01 HG007175NHGRI NIH HHS R01 HG007354NHLBI NIH HHS N01 HC025195NHLBI NIH HHS R01 HL088884NHLBI NIH HHS R01 HL105756NIDA NIH HHS R25 DA027995NIDDK NIH HHS K24 DK080140NIDDK NIH HHS P30 DK063491NIDDK NIH HHS R01 DK078616NIDDK NIH HHS U01 DK078616NIEHS NIH HHS R01 ES024992
6 · The paper itself

Abstract

Loci identified in genome-wide association studies (GWAS) of cardio-metabolic traits account for a small proportion of the traits' heritability. To date, most association studies have not considered parent-of-origin effects (POEs). Here we report investigation of POEs on adiposity and glycemic traits in young adults. The Jerusalem Perinatal Family Follow-Up Study (JPS), comprising 1250 young adults and their mothers was used for discovery. Focusing on 18 genes identified by previous GWAS as associated with cardio-metabolic traits, we used linear regression to examine the associations of maternally- and paternally-derived offspring minor alleles with body mass index (BMI), waist circumference (WC), fasting glucose and insulin. We replicated and meta-analyzed JPS findings in individuals of European ancestry aged ≤50 belonging to pedigrees from the Framingham Heart Study, Family Heart Study and Erasmus Rucphen Family study (total N≅4800). We considered p<2.7x10-4 statistically significant to account for multiple testing. We identified a common coding variant in the 4th exon of APOB (rs1367117) with a significant maternally-derived effect on BMI (β = 0.8; 95%CI:0.4,1.1; p = 3.1x10-5) and WC (β = 2.7; 95%CI:1.7,3.7; p = 2.1x10-7). The corresponding paternally-derived effects were non-significant (p>0.6). Suggestive maternally-derived associations of rs1367117 were observed with fasting glucose (β = 0.9; 95%CI:0.3,1.5; p = 4.0x10-3) and insulin (ln-transformed, β = 0.06; 95%CI:0.03,0.1; p = 7.4x10-4). Bioinformatic annotation for rs1367117 revealed a variety of regulatory functions in this region in liver and adipose tissues and a 50% methylation pattern in liver only, consistent with allelic-specific methylation, which may indicate tissue-specific POE. Our findings demonstrate a maternal-specific association between a common APOB variant and adiposity, an association that was not previously detected in GWAS. These results provide evidence for the role of regulatory mechanisms, POEs specifically, in adiposity. In addition this study highlights the benefit of utilizing family studies for deciphering the genetic architecture of complex traits.

Indexed as

Genomic ImprintingAdiposityAdultApolipoprotein B-100Body Mass IndexCholesterolFemaleGenome-Wide Association StudyGlucoseHumansInsulinMaleObesityPolymorphism, Single NucleotideWaist CircumferenceWaist-Hip RatioAPOB protein, humanApolipoprotein B-100CholesterolGlucoseInsulin

Identifiers

PMID26451733
PMCPMC4599806
OpenAlexW1949237644

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.