Evidence map›Paper›PMID 26451236›Full record

ArticleStandards in genomic sciences2015

Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata.

Julie L Meyer, Brian A Dillard, John M Rodgers, Kim B Ritchie, Valerie J Paul, Max Teplitski

Abstract readCase Reports
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Coral evolutionary responses to microbial symbioses.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Julie L MeyerSoil and Water Science Department, University of Florida-Institute of Food and Agricultural Sciences, Gainesville, FL USA.
Brian A DillardSoil and Water Science Department, University of Florida-Institute of Food and Agricultural Sciences, Gainesville, FL USA.
John M RodgersSoil and Water Science Department, University of Florida-Institute of Food and Agricultural Sciences, Gainesville, FL USA.
Kim B RitchieMote Marine Laboratory, Sarasota, FL USA.
Valerie J PaulSmithsonian Marine Station, Fort Pierce, FL USA.
Max TeplitskiSoil and Water Science Department, University of Florida-Institute of Food and Agricultural Sciences, Gainesville, FL USA ; Smithsonian Marine Station, Fort Pierce, FL USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the gammaproteobacterial genus Halomonas are common in marine environments. Halomonas and other members of the Oceanospirillales have recently been identified as prominent members of the surface microbiota of reef-building corals. Halomonas meridiana strain R1t3 was isolated from the surface mucus layer of the scleractinian coral Acropora palmata in 2005 from the Florida Keys. This strain was chosen for genome sequencing to provide insight into the role of commensal heterotrophic bacteria in the coral holobiont. The draft genome consists of 290 scaffolds, totaling 3.5 Mbp in length and contains 3397 protein-coding genes.

Indexed as

CommensalCoral microbiomeFlorida keysOceanospirillalesSurface mucus layer

Identifiers

PMID26451236
PMCPMC4597393

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.