Evidence map›Paper›PMID 26450422›Full record

ArticleThe Journal of infectious diseases2016

Polymorphisms in HLA Class II Genes Are Associated With Susceptibility to Staphylococcus aureus Infection in a White Population.

Gerald N DeLorenze, Charlotte L Nelson, William K Scott, Andrew S Allen, G Thomas Ray, Ai-Lin Tsai, Charles P Quesenberry, Vance G Fowler

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 56 citations in OpenAlex.

  1. Treatment of Methicillin-ResistantMedicines (Basel, Switzerland) · 2026
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  13. Persistent Methicillin-ResistantAntibiotics (Basel, Switzerland) · 2023
    Review
  14. Article
  15. Article
  16. Article
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  18. International journal of molecular sciences · 2022
    Review
  19. Review
  20. Frontiers in cellular and infection microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Gerald N DeLorenzeDivision of Research, Kaiser Permanente Northern California, Oakland.
Charlotte L NelsonDuke Clinical Research Institute.
William K ScottJohn P. Hussman Institute for Human Genomics Dr. John T. Macdonald Foundation Department of Human Genetics, University of Miami Miller School of Medicine, Florida.
Andrew S AllenDepartment of Biostatistics and Bioinformatics, Duke University School of Medicine, Durham, North Carolina.
G Thomas RayDivision of Research, Kaiser Permanente Northern California, Oakland.
Ai-Lin TsaiDivision of Research, Kaiser Permanente Northern California, Oakland.
Charles P QuesenberryDivision of Research, Kaiser Permanente Northern California, Oakland.
Vance G FowlerDuke Clinical Research Institute Division of Infectious Diseases, Duke University Medical Center.
Kaiser Permanente · USClinical Research Institute · USDuke University · USUniversity of Miami · US

Funding

Duke CTSA (Composite)UL1TR001117 · NCATS · DUKE UNIVERSITY · PI BOULWARE, LEIGH E, LI, JENNIFER S · 2013 to 2017
$41.3M
Host Susceptibility to S. aureusR01AI068804 · NIAID · DUKE UNIVERSITY · PI FOWLER, VANCE G. · 2007 to 2016
$6.9M
NCATS NIH HHS UL1 TR001117NCATS NIH HHS UL1TR001117NIAID NIH HHS 2R01-AI068804NIAID NIH HHS R01 AI068804
6 · The paper itself

Abstract

backgroundStaphylococcus aureus can cause life-threatening infections. Human susceptibility to S. aureus infection may be influenced by host genetic variation.

methodsA genome-wide association study (GWAS) in a large health plan-based cohort included biologic specimens from 4701 culture-confirmed S. aureus cases and 45 344 matched controls; 584 535 single-nucleotide polymorphisms (SNPs) were genotyped on an array specific to individuals of European ancestry. Coverage was increased by imputation of >25 million common SNPs, using the 1000 Genomes Reference panel. In addition, human leukocyte antigen (HLA) serotypes were also imputed.

resultsLogistic regression analysis, performed under the assumption of an additive genetic model, revealed several imputed SNPs (eg, rs115231074: odds ratio [OR], 1.22 [P = 1.3 × 10(-10)]; rs35079132: OR, 1.24 [P = 3.8 × 10(-8)]) achieving genome-wide significance on chromosome 6 in the HLA class II region. One adjacent genotyped SNP was nearly genome-wide significant (rs4321864: OR, 1.13; P = 8.8 × 10(-8)). These polymorphisms are located near the genes encoding HLA-DRA and HLA-DRB1. Results of further logistic regression analysis, in which the most significant GWAS SNPs were conditioned on HLA-DRB1*04 serotype, showed additional support for the strength of association between HLA class II genetic variants and S. aureus infection.

conclusionsOur study results are the first reported evidence of human genetic susceptibility to S. aureus infection.

Indexed as

Genetic Predisposition to DiseasePolymorphism, GeneticAdultAgedAged, 80 and overFemaleGenome-Wide Association StudyGenotypeHistocompatibility Antigens Class IIHumansMaleMiddle AgedOdds RatioStaphylococcal InfectionsStaphylococcus aureusWhite PeopleHistocompatibility Antigens Class IIHLAhost geneticsStaphylococcus aureus

Identifiers

PMID26450422
PMCPMC4747615
OpenAlexW2336011195

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.