Evidence map›Paper›PMID 26450372›Full record

ArticleMicrobiologyOpen2015

The late-annotated small ORF LSO1 is a target gene of the iron regulon of Saccharomyces cerevisiae.

Xiuxiang An, Caiguo Zhang, Robert A Sclafani, Paul Seligman, Mingxia Huang

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xiuxiang AnDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, Colorado, 80045.
Caiguo ZhangDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, Colorado, 80045.
Robert A SclafaniDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, Colorado, 80045.
Paul SeligmanDivision of Hematology, Department of Medicine, University of Colorado School of Medicine, Aurora, Colorado, 80045.
Mingxia HuangDepartment of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, Colorado, 80045.
University of Colorado Denver · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
GENETIC &MOLECULAR ANALYSIS OF YEAST DNA REPLICATIONR01GM035078 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI SCLAFANI, ROBERT A · 1985 to 2012
$3.4M
In Vivo Regulation and Inhibition of Ribonucleotide ReductaseR01CA125574 · NCI · UNIVERSITY OF COLORADO DENVER · PI HUANG, MINGXIA · 2008 to 2012
$1.6M
NCI NIH HHS CA125574NCI NIH HHS P30 CA046934NCI NIH HHS R01 CA125574NIGMS NIH HHS GM35078NIGMS NIH HHS R01 GM035078
6 · The paper itself

Abstract

We have identified a new downstream target gene of the Aft1/2-regulated iron regulon in budding yeast Saccharomyces cerevisiae, the late-annotated small open reading frame LSO1. LSO1 transcript is among the most highly induced from a transcriptome analysis of a fet3-1 mutant grown in the presence of the iron chelator bathophenanthrolinedisulfonic acid. LSO1 has a paralog, LSO2, which is constitutively expressed and not affected by iron availability. In contrast, we find that the LSO1 promoter region contains three consensus binding sites for the Aft1/2 transcription factors and that an LSO1-lacZ reporter is highly induced under low-iron conditions in a Aft1-dependent manner. The expression patterns of the Lso1 and Lso2 proteins mirror those of their mRNAs. Both proteins are localized to the nucleus and cytoplasm, but become more cytoplasmic upon iron deprivation consistent with a role in iron transport. LSO1 and LSO2 appear to play overlapping roles in the cellular response to iron starvation since single lso1 and lso2 mutants are sensitive to iron deprivation and this sensitivity is exacerbated when both genes are deleted.

Indexed as

RegulonBinding SitesGene Expression Regulation, FungalIronPromoter Regions, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription, GeneticIronSaccharomyces cerevisiae ProteinsCell cycleironregulontranscriptomeyeast

Identifiers

PMID26450372
PMCPMC4694146
OpenAlexW2153107613

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.