Evidence map›Paper›PMID 26449251›Full record

ArticleCarcinogenesis2015

Aberrant DNA methylation in non-small cell lung cancer-associated fibroblasts.

Miguel Vizoso, Marta Puig, F Javier Carmona, María Maqueda, Adriana Velásquez, Antonio Gómez, Anna Labernadie, Roberto Lugo, Marta Gabasa, Luis G Rigat-Brugarolas and 8 more

Open access · greenAbstract read
In one paragraph

Article in Carcinogenesis, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
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  20. Epigenetic regulation of cancer-associated fibroblast heterogeneity.Biochimica et biophysica acta. Reviews on cancer · 2023
    Review

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 1 country.

Miguel VizosoCancer Epigenetics and Biology Program, Bellvitge Biomedical Research Institute, L'Hospitalet de Llobregat 08907, Barcelona, Spain.
Marta PuigUnit of Biophysics and Bioengineering, School of Medicine, University of Barcelona, Barcelona 08036, Spain, Medical Oncology Department, Hospital Clínic of Barcelona, August Pi i Sunyer Biomedical Institute (IDIBAPS), Barcelona 08036, Spain.
F Javier CarmonaCancer Epigenetics and Biology Program, Bellvitge Biomedical Research Institute, L'Hospitalet de Llobregat 08907, Barcelona, Spain.
María MaquedaDepartment of ESAII, Center for Biomedical Engineering Research, Technical University of Catalonia (UPC), CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Barcelona 08028, Spain.
Adriana VelásquezUnit of Biophysics and Bioengineering, School of Medicine, University of Barcelona, Barcelona 08036, Spain.
Antonio GómezCancer Epigenetics and Biology Program, Bellvitge Biomedical Research Institute, L'Hospitalet de Llobregat 08907, Barcelona, Spain.
Anna LabernadieInstitute for Bioengineering of Catalonia (IBEC), Barcelona 08028, Spain.
Roberto LugoUnit of Biophysics and Bioengineering, School of Medicine, University of Barcelona, Barcelona 08036, Spain.
Marta GabasaUnit of Biophysics and Bioengineering, School of Medicine, University of Barcelona, Barcelona 08036, Spain.
Luis G Rigat-BrugarolasDepartment of ESAII, Center for Biomedical Engineering Research, Technical University of Catalonia (UPC), CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Barcelona 08028, Spain, Institute for Bioengineering of Catalonia (IBEC), Barcelona 08028, Spain.
Xavier TrepatUnit of Biophysics and Bioengineering, School of Medicine, University of Barcelona, Barcelona 08036, Spain, Institute for Bioengineering of Catalonia (IBEC), Barcelona 08028, Spain, Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona 08010, Spain.
Josep RamírezServei d'Anatomia Patològica, Hospital Clínic de Barcelona, Barcelona 08036, Spain.
Sebastian MoranCancer Epigenetics and Biology Program, Bellvitge Biomedical Research Institute, L'Hospitalet de Llobregat 08907, Barcelona, Spain.
Enrique VidalCancer Epigenetics and Biology Program, Bellvitge Biomedical Research Institute, L'Hospitalet de Llobregat 08907, Barcelona, Spain.
Noemí ReguartMedical Oncology Department, Hospital Clínic of Barcelona, August Pi i Sunyer Biomedical Institute (IDIBAPS), Barcelona 08036, Spain.
Alexandre PereraDepartment of ESAII, Center for Biomedical Engineering Research, Technical University of Catalonia (UPC), CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), Barcelona 08028, Spain.
Manel EstellerCancer Epigenetics and Biology Program, Bellvitge Biomedical Research Institute, L'Hospitalet de Llobregat 08907, Barcelona, Spain, Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona 08010, Spain, Department of Physiological Sciences II, School of Medicine, University of L'Hospitalet de Llobregat 08907, Barcelona, Spain and jalcaraz@ub.edu.
Jordi AlcarazUnit of Biophysics and Bioengineering, School of Medicine, University of Barcelona, Barcelona 08036, Spain, CIBER de Enfermedades Respiratorias (CIBERES), Madrid, 28029, Spain jalcaraz@ub.edu.
Universitat de Barcelona · ESInstitut d'Investigació Biomédica de Bellvitge · ESBellvitge University Hospital · ESUniversitat Politècnica de Catalunya · ESBiomedical Research Networking Center in Bioengineering, Biomaterials and Nanomedicine · ESConsorci Institut D'Investigacions Biomediques August Pi I Sunyer · ESHospital Clínic de Barcelona · ESInstitute for Bioengineering of Catalonia · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetic changes through altered DNA methylation have been implicated in critical aspects of tumor progression, and have been extensively studied in a variety of cancer types. In contrast, our current knowledge of the aberrant genomic DNA methylation in tumor-associated fibroblasts (TAFs) or other stromal cells that act as critical coconspirators of tumor progression is very scarce. To address this gap of knowledge, we conducted genome-wide DNA methylation profiling on lung TAFs and paired control fibroblasts (CFs) from non-small cell lung cancer patients using the HumanMethylation450 microarray. We found widespread DNA hypomethylation concomitant with focal gain of DNA methylation in TAFs compared to CFs. The aberrant DNA methylation landscape of TAFs had a global impact on gene expression and a selective impact on the TGF-β pathway. The latter included promoter hypermethylation-associated SMAD3 silencing, which was associated with hyperresponsiveness to exogenous TGF-β1 in terms of contractility and extracellular matrix deposition. In turn, activation of CFs with exogenous TGF-β1 partially mimicked the epigenetic alterations observed in TAFs, suggesting that TGF-β1 may be necessary but not sufficient to elicit such alterations. Moreover, integrated pathway-enrichment analyses of the DNA methylation alterations revealed that a fraction of TAFs may be bone marrow-derived fibrocytes. Finally, survival analyses using DNA methylation and gene expression datasets identified aberrant DNA methylation on the EDARADD promoter sequence as a prognostic factor in non-small cell lung cancer patients. Our findings shed light on the unique origin and molecular alterations underlying the aberrant phenotype of lung TAFs, and identify a stromal biomarker with potential clinical relevance.

Indexed as

DNA MethylationAdenocarcinomaCarcinoma, Non-Small-Cell LungCarcinoma, Squamous CellEpigenesis, GeneticExtracellular MatrixFibroblastsFocal AdhesionsGene Expression Regulation, NeoplasticHumansLung NeoplasmsMaleMicroRNAsMiddle AgedReceptors, IgGSequence Analysis, DNAMicroRNAsReceptors, IgGSmad3 ProteinSMAD3 protein, humanTransforming Growth Factor beta1

Identifiers

PMID26449251
PMCPMC4662832
OpenAlexW2179488104

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.