Evidence map›Paper›PMID 26448477›Full record

ArticleProtein science : a publication of the Protein Society2016

Elucidating nitric oxide synthase domain interactions by molecular dynamics.

Scott A Hollingsworth, Jeffrey K Holden, Huiying Li, Thomas L Poulos

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Analyzing the FMN-heme interdomain docking interactions in neuronal and inducible NOS isoforms by pulsed EPR experiments and conformational distribution modeling.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
    Article
  3. Probing calmodulin-NO synthase interactions via site-specific infrared spectroscopy: an introductory investigation.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
    Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Nitric oxide synthase and structure-based inhibitor design.Nitric oxide : biology and chemistry · 2017
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

Scott A HollingsworthDepartment of Molecular Biology and Biochemistry, University of California, Irvine, California, 92697.
Jeffrey K HoldenDepartment of Molecular Biology and Biochemistry, University of California, Irvine, California, 92697.
Huiying LiDepartment of Molecular Biology and Biochemistry, University of California, Irvine, California, 92697.
Thomas L PoulosDepartment of Molecular Biology and Biochemistry, University of California, Irvine, California, 92697.
University of California, Irvine · US

Funding

CARCINOGENESIST32CA009054 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDINGER, AIMEE L, FRUMAN, DAVID ALEXANDER · 1985 to 2025
$8.6M
STRUCTURAL STUDIES ON NITRIC OXIDE SYNTHASER01GM057353 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI POULOS, THOMAS L · 1998 to 2018
$6.8M
Training Program in Chemical and Structural BiologyT32GM108561 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI POULOS, THOMAS L, TOBIAS, DOUGLAS J · 2014 to 2018
$860k
NCI NIH HHS T32 CA009054NIGMS NIH HHS GM57353NIGMS NIH HHS R01 GM057353NIGMS NIH HHS T32-GM10856NIGMS NIH HHS T32 GM108561
6 · The paper itself

Abstract

Nitric oxide synthase (NOS) is a multidomain enzyme that catalyzes the production of nitric oxide (NO) by oxidizing L-Arg to NO and L-citrulline. NO production requires multiple interdomain electron transfer steps between the flavin mononucleotide (FMN) and heme domain. Specifically, NADPH-derived electrons are transferred to the heme-containing oxygenase domain via the flavin adenine dinucleotide (FAD) and FMN containing reductase domains. While crystal structures are available for both the reductase and oxygenase domains of NOS, to date there is no atomic level structural information on domain interactions required for the final FMN-to-heme electron transfer step. Here, we evaluate a model of this final electron transfer step for the heme-FMN-calmodulin NOS complex based on the recent biophysical studies using a 105-ns molecular dynamics trajectory. The resulting equilibrated complex structure is very stable and provides a detailed prediction of interdomain contacts required for stabilizing the NOS output state. The resulting equilibrated complex model agrees well with previous experimental work and provides a detailed working model of the final NOS electron transfer step required for NO biosynthesis.

Indexed as

Molecular Dynamics SimulationCalmodulinElectron TransportFlavin MononucleotideHemeHumansNADPNitric OxideNitric Oxide Synthase Type IIOxidation-ReductionProtein Interaction Domains and MotifsCalmodulinFlavin MononucleotideHemeNADPNitric OxideNitric Oxide Synthase Type IINOS2 protein, humanelectron transfermolecular dynamicsnitric oxide synthaseprotein complexredox partners

Identifiers

PMID26448477
PMCPMC4815339
OpenAlexW1764192151

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.