Evidence map›Paper›PMID 26448050›Full record

ArticlePloS one2015

Inherited Inflammatory Response Genes Are Associated with B-Cell Non-Hodgkin's Lymphoma Risk and Survival.

Kaspar René Nielsen, Rudi Steffensen, Mette Dahl Bendtsen, Maria Rodrigo-Domingo, John Baech, Thure Mors Haunstrup, Kim Steve Bergkvist, Alexander Schmitz, Julie Stoeveve Boedker, Preben Johansen and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 2 pooled it
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 2 syntheses or guidelines pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. International journal of molecular sciences · 2024
    Article
  6. Article
  7. Review
  8. Oncotarget · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Kaspar René NielsenDepartment of Clinical Immunology, Aalborg University Hospital, Aalborg, Denmark.
Rudi SteffensenDepartment of Clinical Immunology, Aalborg University Hospital, Aalborg, Denmark.
Mette Dahl BendtsenDepartment of Clinical Medicine, Aalborg University, Aalborg, Denmark.
Maria Rodrigo-DomingoDepartment of Haematology, Aalborg University Hospital, Aalborg, Denmark.
John BaechDepartment of Clinical Immunology, Aalborg University Hospital, Aalborg, Denmark.
Thure Mors HaunstrupDepartment of Clinical Immunology, Aalborg University Hospital, Aalborg, Denmark.
Kim Steve BergkvistDepartment of Haematology, Aalborg University Hospital, Aalborg, Denmark.
Alexander SchmitzDepartment of Haematology, Aalborg University Hospital, Aalborg, Denmark.
Julie Stoeveve BoedkerDepartment of Haematology, Aalborg University Hospital, Aalborg, Denmark.
Preben JohansenDepartment of Haematopathology, Aalborg University Hospital, Aalborg, Denmark.
Karen DybkaeærDepartment of Haematology, Aalborg University Hospital, Aalborg, Denmark; Department of Clinical Medicine, Aalborg University, Aalborg, Denmark.
Martin BoeøgstedDepartment of Haematology, Aalborg University Hospital, Aalborg, Denmark; Department of Clinical Medicine, Aalborg University, Aalborg, Denmark.
Hans Erik JohnsenDepartment of Haematology, Aalborg University Hospital, Aalborg, Denmark; Clinical Cancer Research Center, Aalborg University Hospital, Aalborg, Denmark; Department of Clinical Medicine, Aalborg University, Aalborg, Denmark.
Aalborg University Hospital · DKAalborg University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMalignant B-cell clones are affected by both acquired genetic alterations and by inherited genetic variations changing the inflammatory tumour microenvironment.

methodsWe investigated 50 inflammatory response gene polymorphisms in 355 B-cell non-Hodgkin's lymphoma (B-NHL) samples encompassing 216 diffuse large B cell lymphoma (DLBCL) and 139 follicular lymphoma (FL) and 307 controls. The effect of single genes and haplotypes were investigated and gene-expression analysis was applied for selected genes. Since interaction between risk genes can have a large impact on phenotype, two-way gene-gene interaction analysis was included.

resultsWe found inherited SNPs in genes critical for inflammatory pathways; TLR9, IL4, TAP2, IL2RA, FCGR2A, TNFA, IL10RB, GALNT12, IL12A and IL1B were significantly associated with disease risk and SELE, IL1RN, TNFA, TAP2, MBL2, IL5, CX3CR1, CHI3L1 and IL12A were, associated with overall survival (OS) in specific diagnostic entities of B-NHL. We discovered noteworthy interactions between DLBCL risk alleles on IL10 and IL4RA and FL risk alleles on IL4RA and IL4. In relation to OS, a highly significant interaction was observed in DLBCL for IL4RA (rs1805010) * IL10 (rs1800890) (HR = 0.11 (0.02-0.50)). Finally, we explored the expression of risk genes from the gene-gene interaction analysis in normal B-cell subtypes showing a different expression of IL4RA, IL10, IL10RB genes supporting a pathogenetic effect of these interactions in the germinal center.

conclusionsThe present findings support the importance of inflammatory genes in B-cell lymphomas. We found association between polymorphic sites in inflammatory response genes and risk as well as outcome in B-NHL and suggest an effect of gene-gene interactions during the stepwise oncogenesis.

Indexed as

AgedAllelesFemaleGenotypeHaplotypesHumansInterleukin-10Interleukin-10 Receptor beta SubunitInterleukin-4Interleukin-4 Receptor alpha SubunitLinkage DisequilibriumLymphoma, FollicularLymphoma, Large B-Cell, DiffuseMaleMiddle AgedOdds RatioIL10RB protein, humanIL4 protein, humanIL4R protein, humanInterleukin-10Interleukin-10 Receptor beta SubunitInterleukin-4Interleukin-4 Receptor alpha Subunit

Identifiers

PMID26448050
PMCPMC4598167
OpenAlexW1938484148

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.