ArticleThe Journal of heredity
A Study of Applicability of SNP Chips Developed for Bovine and Ovine Species to Whole-Genome Analysis of Reindeer Rangifer tarandus.
Article in The Journal of heredity. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
11 citing papers in PubMed, 24 citations in OpenAlex.
- Development of High-Throughput Genomic Resources to Inform White-Tailed Deer Population and Disease Management.Molecular ecology resources · 2026Article
- Review
- Genomics reveal local skin immune response key to control sarcoptic mange in Iberian ibex (Capra pyrenaica).BMC genomics · 2024Article
- Insight into the Current Genetic Diversity and Population Structure of Domestic Reindeer (Animals : an open access journal from MDPI · 2020Article
- Evaluation of a Chicken 600K SNP genotyping array in non-model species of grouse.Scientific reports · 2019Article
- Evaluation of SNP Genotyping in Alpacas Using the Bovine HD Genotyping Beadchip.Frontiers in genetics · 2019Article
- Genome-wide SNP analysis unveils genetic structure and phylogeographic history of snow sheep (Ecology and evolution · 2018Article
- Article
- Cross-Species Application of SNP Chips is Not Suitable for Identifying Runs of Homozygosity.The Journal of heredity · 2016Article
- Response to "Cross-Species Application of SNP Chips is Not Suitable for Identifying Runs of Homozygosity" by Shafer, Miller, and Kardos.The Journal of heredity · 2016Article
- Novel Graphical Analyses of Runs of Homozygosity among Species and Livestock Breeds.International journal of genomics · 2016Article
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus.
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