Evidence map›Paper›PMID 26446933›Full record

ArticleMolecular systems biology2015

Condition-specific genetic interaction maps reveal crosstalk between the cAMP/PKA and the HOG MAPK pathways in the activation of the general stress response.

Jenia Gutin, Amit Sadeh, Ayelet Rahat, Amir Aharoni, Nir Friedman

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 53 citations in OpenAlex.

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  6. The regulatory landscape of the yeast phosphoproteome.Nature structural & molecular biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jenia GutinSchool of Computer Science & Engineering Institute of Life Sciences Hebrew University, Jerusalem, Israel.
Amit SadehSchool of Computer Science & Engineering Institute of Life Sciences Hebrew University, Jerusalem, Israel.
Ayelet RahatSchool of Computer Science & Engineering Institute of Life Sciences Hebrew University, Jerusalem, Israel.
Amir AharoniDepartment of Life Science, National Institute for Biotechnology in the Negev Ben-Gurion University of the Negev, Be'er Sheva, Israel.
Nir FriedmanSchool of Computer Science & Engineering Institute of Life Sciences Hebrew University, Jerusalem, Israel nir@cs.huji.ac.il.
Hebrew University of Jerusalem · ILBen-Gurion University of the Negev · IL

Funding

European Research Council 233169
6 · The paper itself

Abstract

Cells must quickly respond and efficiently adapt to environmental changes. The yeast Saccharomyces cerevisiae has multiple pathways that respond to specific environmental insults, as well as a generic stress response program. The later is regulated by two transcription factors, Msn2 and Msn4, that integrate information from upstream pathways to produce fast, tunable, and robust response to different environmental changes. To understand this integration, we employed a systematic approach to genetically dissect the contribution of various cellular pathways to Msn2/4 regulation under a range of stress and growth conditions. We established a high-throughput liquid handling and automated flow cytometry system and measured GFP levels in 68 single-knockout and 1,566 double-knockout strains that carry an HSP12-GFP allele as a reporter for Msn2/4 activity. Based on the expression of this Msn2/4 reporter in five different conditions, we identified numerous genetic and epistatic interactions between different components in the network upstream to Msn2/4. Our analysis gains new insights into the functional specialization of the RAS paralogs in the repression of stress response and identifies a three-way crosstalk between the Mediator complex, the HOG MAPK pathway, and the cAMP/PKA pathway.

Indexed as

MAP Kinase Signaling SystemCyclic AMPCyclic AMP-Dependent Protein KinasesYeastsCyclic AMPCyclic AMP-Dependent Protein Kinasesbudding yeastgenetic interactionsMsn2 and Msn4signaling pathwaystranscriptional response to stress

Identifiers

PMID26446933
PMCPMC4631200
OpenAlexW2107022906

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.