Evidence map›Paper›PMID 26446480›Full record

ArticleScientific reports2015

Clostridium difficile: New Insights into the Evolution of the Pathogenicity Locus.

Marc Monot, Catherine Eckert, Astrid Lemire, Audrey Hamiot, Thomas Dubois, Carine Tessier, Bruno Dumoulard, Benjamin Hamel, Amandine Petit, Valérie Lalande and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 145 citations in OpenAlex.

  1. Review
  2. Colonization Dynamics ofVeterinary sciences · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. iScience · 2025
    Article
  10. Article
  11. Applied and environmental microbiology · 2025
    Article
  12. Diversity ofApplied and environmental microbiology · 2024
    Article
  13. Article
  14. Article
  15. One health (Amsterdam, Netherlands) · 2024
    Article
  16. Toxins · 2024
    Review
  17. Review
  18. Article
  19. Genomic and phenotypic characterization of aFrontiers in cellular and infection microbiology · 2024
    Article
  20. Comparative Genomics of Clostridioides difficile.Advances in experimental medicine and biology · 2024
    Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Marc MonotLaboratoire Pathogenèse des Bactéries Anaérobies, Institut Pasteur, Paris, France.
Catherine EckertAP-HP, Hôpital Saint Antoine National Reference Laboratory for C. difficile, Paris, France.
Astrid LemireAP-HP, Hôpital Saint Antoine National Reference Laboratory for C. difficile, Paris, France.
Audrey HamiotLaboratoire Pathogenèse des Bactéries Anaérobies, Institut Pasteur, Paris, France.
Thomas DuboisLaboratoire Pathogenèse des Bactéries Anaérobies, Institut Pasteur, Paris, France.
Carine TessierAP-HP, Hôpital Saint Antoine National Reference Laboratory for C. difficile, Paris, France.
Bruno DumoulardCH, Hôpital Cambrai, Cambrai, France.
Benjamin HamelHôpital de Villefranche-sur-Saône, Villefranche-sur-Saône, France.
Amandine PetitAP-HP, Hôpital Saint Antoine National Reference Laboratory for C. difficile, Paris, France.
Valérie LalandeAP-HP, Hôpital Saint Antoine National Reference Laboratory for C. difficile, Paris, France.
Laurence MaPlate-forme Génomique, Institut Pasteur, Paris, France.
Christiane BouchierPlate-forme Génomique, Institut Pasteur, Paris, France.
Frédéric BarbutAP-HP, Hôpital Saint Antoine National Reference Laboratory for C. difficile, Paris, France.
Bruno DupuyLaboratoire Pathogenèse des Bactéries Anaérobies, Institut Pasteur, Paris, France.
Institut Pasteur · FRSorbonne Université · FRAssistance Publique – Hôpitaux de Paris · FRHôpital Nord · FRHôpital Saint-Antoine · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The major virulence factors of Clostridium difficile are toxins A and B. These toxins are encoded by tcdA and tcdB genes, which form a pathogenicity locus (PaLoc) together with three additional genes that have been implicated in regulation (tcdR and tcdC) and secretion (tcdE). To date, the PaLoc has always been found in the same location and is replaced in non-toxigenic strains by a highly conserved 75/115 bp non-coding region. Here, we show new types of C. difficile pathogenicity loci through the genome analysis of three atypical clinical strains and describe for the first time a variant strain producing only toxin A (A(+)B(-)). Importantly, we found that the PaLoc integration sites of these three strains are located in the genome far from the usual single known PaLoc integration site. These findings allowed us to propose a new model of PaLoc evolution in which two "Mono-Toxin PaLoc" sites are merged to generate a single "Bi-Toxin PaLoc".

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBacterial ToxinsClostridioides difficileEnterotoxinsEvolution, MolecularGenetic LociGenomic IslandsHumansPhylogenySequence Analysis, DNAVirulenceBacterial ProteinsBacterial ToxinsEnterotoxinstcdA protein, Clostridium difficiletoxB protein, Clostridium difficile

Identifiers

PMID26446480
PMCPMC4597214
OpenAlexW2267940328

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.