Evidence map›Paper›PMID 26446352›Full record

ArticleEuropean biophysics journal : EBJ2016

Insights into open/closed conformations of the catalytically active human guanylate kinase as investigated by small-angle X-ray scattering.

Rohit Jain, Nazimuddin Khan, Andreas Menzel, Ivan Rajkovic, Manfred Konrad, Simone Techert

Open access · hybridAbstract read
In one paragraph

Article in European biophysics journal : EBJ, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Rohit JainMax Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany.
Nazimuddin KhanMax Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany.
Andreas MenzelPaul Scherrer Institute, 5232, Villingen, Switzerland.
Ivan RajkovicPaul Scherrer Institute, 5232, Villingen, Switzerland.
Manfred KonradMax Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany. mkonrad@mpibpc.mpg.de.
Simone TechertMax Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany. stecher@mpibpc.mpg.de.
Max Planck Institute for Biophysical Chemistry · DEPaul Scherrer Institute · CHUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bio-catalysis is the outcome of a subtle interplay between internal motions in enzymes and chemical kinetics. Small-angle X-ray scattering (SAXS) investigation of an enzyme's internal motions during catalysis offers an integral view of the protein's structural plasticity, dynamics, and function, which is useful for understanding allosteric effects and developing novel medicines. Guanylate kinase (GMPK) is an essential enzyme involved in the guanine nucleotide metabolism of unicellular and multicellular organisms. It is also required for the intracellular activation of numerous antiviral and anticancer purine nucleoside analog prodrugs. Catalytically active recombinant human GMPK (hGMPK) was purified for the first time and changes in the size and shape of open/closed hGMPK were tracked by SAXS. The binding of substrates (GMP + AMPPNP or Ap5G or GMP + ADP) resulted in the compaction of size and shape of hGMPK. The structural changes between open and completely closed hGMPK conformation were confirmed by observing differences in the hGMPK secondary structures with circular dichroism spectroscopy.

Indexed as

Catalytic DomainMolecular Dynamics SimulationAmino Acid SequenceGuanylate CyclaseHumansMolecular Sequence DataScattering, Small AngleX-Ray DiffractionGuanylate CyclaseEnzymeGuanylate kinase (GMPK)Nucleotide kinaseProtein conformationsSmall-angle X-ray scattering (SAXS)

Identifiers

PMID26446352
PMCPMC4698301
OpenAlexW2151278974

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.