Evidence map›Paper›PMID 26445482›Full record

ArticleBMC microbiology2015

Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response.

Nanna B Svenningsen, Danilo Pérez-Pantoja, Pablo I Nikel, Mette H Nicolaisen, Víctor de Lorenzo, Ole Nybroe

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Nanna B SvenningsenDepartment of Plant and Environmental Sciences, Section of Genetics and Microbiology, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark. nbsv@plen.ku.dk.
Danilo Pérez-PantojaSystems and Synthetic Biology Program, Centro Nacional de Biotecnología (CNB-CSIC), C/ Darwin 3, 28049, Madrid, Spain. drperez@cnb.csic.es.
Pablo I NikelSystems and Synthetic Biology Program, Centro Nacional de Biotecnología (CNB-CSIC), C/ Darwin 3, 28049, Madrid, Spain. pablo.nikel@cnb.csic.es.
Mette H NicolaisenDepartment of Plant and Environmental Sciences, Section of Genetics and Microbiology, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark. meni@plen.ku.dk.
Víctor de LorenzoSystems and Synthetic Biology Program, Centro Nacional de Biotecnología (CNB-CSIC), C/ Darwin 3, 28049, Madrid, Spain. vdlorenzo@cnb.csic.es.
Ole NybroeDepartment of Plant and Environmental Sciences, Section of Genetics and Microbiology, University of Copenhagen, Thorvaldsensvej 40, 1871, Frederiksberg C, Denmark. oln@plen.ku.dk.
Centro Nacional de Biotecnología · ESUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSoil bacteria typically thrive in water-limited habitats that cause an inherent matric stress to the cognate cells. Matric stress gives rise to accumulation of intracellular reactive oxygen species (ROS), which in turn may induce oxidative stress, and even promote mutagenesis. However, little is known about the impact of ROS induced by water limitation on bacteria performing important processes as pollutant biodegradation in the environment. We have rigorously examined the physiological consequences of the rise of intracellular ROS caused by matric stress for the toluene- and xylene-degrading soil bacterium Pseudomonas putida mt-2.

methodsFor the current experiments, controlled matric potential stress was delivered to P. putida cells by addition of polyethylene glycol to liquid cultures, and ROS formation in individual cells monitored by a specific dye. The physiological response to ROS was then quantified by both RT-qPCR of RNA transcripts from genes accredited as proxies of oxidative stress and the SOS response along with cognate transcriptional GFP fusions to the promoters of the same genes.

resultsExtensive matric stress at -1.5 MPa clearly increased intracellular accumulation of ROS. The expression of the two major oxidative defense genes katA and ahpC, as well as the hydroperoxide resistance gene osmC, was induced under matric stress. Different induction profiles of the reporters were related to the severity of the stress. To determine if matric stress lead to induction of the SOS-response, we constructed a DNA damage-inducible bioreporter based on the LexA-controlled phage promoter PPP3901. According to bioreporter analysis, this gene was expressed during extensive matric stress. Despite this DNA-damage mediated gene induction, we observed no increase in the mutation frequency as monitored by emergence of rifampicin-resistant colonies.

conclusionsUnder conditions of extensive matric stress, we observed a direct link between matric stress, ROS formation, induction of ROS-detoxifying functions and (partial) activation of the SOS system. However, such a stress-response regime did not translate into a general DNA mutagenesis status. Taken together, the data suggest that P. putida mt-2 can cope with this archetypal environmental stress while preserving genome stability, a quality that strengthens the status of this bacterium for biotechnological purposes.

Indexed as

DesiccationOxidative StressStress, PhysiologicalGene Expression ProfilingPseudomonas putidaReactive Oxygen SpeciesReal-Time Polymerase Chain ReactionSoil MicrobiologySoil PollutantsSOS Response, GeneticsTolueneXylenesReactive Oxygen SpeciesSoil PollutantsTolueneXylenes

Identifiers

PMID26445482
PMCPMC4595014
OpenAlexW2149680259

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.