Evidence map›Paper›PMID 26445447›Full record

ArticleBiophysical journal2015

Fast Three-Dimensional Single-Particle Tracking in Natural Brain Tissue.

Stefan Sokoll, Yury Prokazov, Magnus Hanses, Barbara Biermann, Klaus Tönnies, Martin Heine

Abstract readEvaluation Study
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Stefan SokollResearch Group for Molecular Physiology, Leibniz Institute for Neurobiology, Magdeburg, Germany; Research Group for Image Processing and Pattern Recognition, Otto-von-Guericke University, Magdeburg, Germany.
Yury ProkazovSpecial Lab for Electron and Laserscanning Microscopy, Leibniz Institute for Neurobiology, Magdeburg, Germany.
Magnus HansesResearch Group for Molecular Physiology, Leibniz Institute for Neurobiology, Magdeburg, Germany.
Barbara BiermannResearch Group for Molecular Physiology, Leibniz Institute for Neurobiology, Magdeburg, Germany; Institute of Neural and Sensory Physiology, Medical Faculty, University of Düsseldorf, Germany.
Klaus TönniesResearch Group for Image Processing and Pattern Recognition, Otto-von-Guericke University, Magdeburg, Germany.
Martin HeineResearch Group for Molecular Physiology, Leibniz Institute for Neurobiology, Magdeburg, Germany. Electronic address: martin.heine@lin-magdeburg.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Observation of molecular dynamics is often biased by the optical very heterogeneous environment of cells and complex tissue. Here, we have designed an algorithm that facilitates molecular dynamic analyses within brain slices. We adjust fast astigmatism-based three-dimensional single-particle tracking techniques to depth-dependent optical aberrations induced by the refractive index mismatch so that they are applicable to complex samples. In contrast to existing techniques, our online calibration method determines the aberration directly from the acquired two-dimensional image stream by exploiting the inherent particle movement and the redundancy introduced by the astigmatism. The method improves the positioning by reducing the systematic errors introduced by the aberrations, and allows correct derivation of the cellular morphology and molecular diffusion parameters in three dimensions independently of the imaging depth. No additional experimental effort for the user is required. Our method will be useful for many imaging configurations, which allow imaging in deep cellular structures.

Indexed as

AlgorithmsAnimalsBrainCalibrationDiffusionImaging, Three-DimensionalMiceModels, NeurologicalMolecular Dynamics SimulationMolecular ImagingTimeTissue Culture Techniques

Identifiers

PMID26445447
PMCPMC4601043

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.