Evidence map›Paper›PMID 26445436›Full record

ArticleBiophysical journal2015

A Mechanistic Collective Cell Model for Epithelial Colony Growth and Contact Inhibition.

Sebastian Aland, Haralambos Hatzikirou, John Lowengrub, Axel Voigt

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in Biophysical journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Sebastian AlandDepartment of Mathematics, Technische Universität Dresden, Dresden, Germany. Electronic address: sebastian.aland@tu-dresden.de.
Haralambos HatzikirouDepartment of Mathematics, Technische Universität Dresden, Dresden, Germany; Center for Advancing Electronics Dresden (CfAED), Technische Universität Dresden, Dresden, Germany.
John LowengrubDepartment of Mathematics and Center for Complex Biological Systems, University of California Irvine, Irvine, California. Electronic address: lowengrb@math.uci.edu.
Axel VoigtDepartment of Mathematics, Technische Universität Dresden, Dresden, Germany; Center for Advancing Electronics Dresden (CfAED), Technische Universität Dresden, Dresden, Germany; Center for Systems Biology Dresden (CSBD), Dresden, Germany.
Technische Universität Dresden · DECenter for Systems Biology Dresden · DEUniversity of California, Irvine · US

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Christine Hui · 1994 to 2026
$57.9M
Uncover Strategies Used By Biological SystemsP50GM076516 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2007 to 2016
$25.1M
NCI NIH HHS P30 CA062203NCI NIH HHS P30CA062203NIGMS NIH HHS P50 GM076516NIGMS NIH HHS P50GM76516
6 · The paper itself

Abstract

We present a mechanistic hybrid continuum-discrete model to simulate the dynamics of epithelial cell colonies. Collective cell dynamics are modeled using continuum equations that capture plastic, viscoelastic, and elastic deformations in the clusters while providing single-cell resolution. The continuum equations can be viewed as a coarse-grained version of previously developed discrete models that treat epithelial clusters as a two-dimensional network of vertices or stochastic interacting particles and follow the framework of dynamic density functional theory appropriately modified to account for cell size and shape variability. The discrete component of the model implements cell division and thus influences cell size and shape that couple to the continuum component. The model is validated against recent in vitro studies of epithelial cell colonies using Madin-Darby canine kidney cells. In good agreement with experiments, we find that mechanical interactions and constraints on the local expansion of cell size cause inhibition of cell motion and reductive cell division. This leads to successively smaller cells and a transition from exponential to quadratic growth of the colony that is associated with a constant-thickness rim of growing cells at the cluster edge, as well as the emergence of short-range ordering and solid-like behavior. A detailed analysis of the model reveals a scale invariance of the growth and provides insight into the generation of stresses and their influence on the dynamics of the colonies. Compared to previous models, our approach has several advantages: it is independent of dimension, it can be parameterized using classical elastic properties (Poisson's ratio and Young's modulus), and it can easily be extended to incorporate multiple cell types and general substrate geometries.

Indexed as

Models, BiologicalAlgorithmsAnimalsBiomechanical PhenomenaCell DivisionCell MovementCell ProliferationCell SizeComputer SimulationDogsElasticityEpithelial CellsMadin Darby Canine Kidney CellsMitosis

Identifiers

PMID26445436
PMCPMC4601048
OpenAlexW1826282670

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.