Evidence map›Paper›PMID 26442846›Full record

ReviewAnnual review of genetics2015

Giving Time Purpose: The Synechococcus elongatus Clock in a Broader Network Context.

Ryan K Shultzaberger, Joseph S Boyd, Spencer Diamond, Ralph J Greenspan, Susan S Golden

Abstract readReview
In one paragraph

Review in Annual review of genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Circadian regulation of metabolism across photosynthetic organisms.The Plant journal : for cell and molecular biology · 2023
    Review
  5. Article
  6. KidA, a multi-PAS domain protein, tunes the period of the cyanobacterial circadian oscillator.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Review
  8. Journal of bacteriology · 2020
    Article
  9. Crosstalk between metabolism and circadian clocks.Nature reviews. Molecular cell biology · 2019
    Review
  10. Review
  11. Review
  12. Article
  13. Cellular trade-offs and optimal resource allocation during cyanobacterial diurnal growth.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  14. Article
  15. Review
  16. Redox crisis underlies conditional light-dark lethality in cyanobacterial mutants that lack the circadian regulator, RpaA.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Article
  18. Toward Multiscale Models of Cyanobacterial Growth: A Modular Approach.Frontiers in bioengineering and biotechnology · 2016
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ryan K Shultzaberger *Center for Circadian Biology, University of California San Diego, La Jolla, USA, 92093.
Joseph S Boyd *Center for Circadian Biology, University of California San Diego, La Jolla, USA, 92093.
Spencer Diamond *Center for Circadian Biology, University of California San Diego, La Jolla, USA, 92093.
Ralph J GreenspanCenter for Circadian Biology, University of California San Diego, La Jolla, USA, 92093.
Susan S GoldenCenter for Circadian Biology, University of California San Diego, La Jolla, USA, 92093.

Funding

GENETIC MECHANISMS AND REGULATIONT32GM007240 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMPTON, RANDOLPH Y. · 1985 to 2019
$23.8M
THE PATHWAY THAT SETS THE CYANOBACTERIAL CIRCADIAN CLOCKR01GM062419 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GOLDEN, SUSAN S · 2001 to 2015
$3.9M
NIGMS NIH HHS R01 GM062419NIGMS NIH HHS R01GM062419NIGMS NIH HHS T32 GM007240NIGMS NIH HHS T32GM007240
6 · The paper itself

Abstract

Early research on the cyanobacterial clock focused on characterizing the genes needed to keep, entrain, and convey time within the cell. As the scope of assays used in molecular genetics has expanded to capture systems-level properties (e.g., RNA-seq, ChIP-seq, metabolomics, high-throughput screening of genetic variants), so has our understanding of how the clock fits within and influences a broader cellular context. Here we review the work that has established a global perspective of the clock, with a focus on (a) an emerging network-centric view of clock architecture, (b) mechanistic insights into how temporal and environmental cues are transmitted and integrated within this network,

Indexed as

Adaptation, BiologicalBiological EvolutionCircadian RhythmGene Expression Regulation, BacterialSignal TransductionSynechococcuscircadian rhythmsglobal regulationkai oscillatorRpaA

Identifiers

PMID26442846
PMCPMC4769874

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.