Evidence map›Paper›PMID 26442598›Full record

ArticleScientific reports2015

Direct regulation of the natural competence regulator gene tfoX by cyclic AMP (cAMP) and cAMP receptor protein (CRP) in Vibrios.

Rui Wu, Meng Zhao, Jing Li, He Gao, Biao Kan, Weili Liang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 41 citations in OpenAlex.

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  9. DegS regulates the aerobic metabolism ofFrontiers in cellular and infection microbiology · 2024
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  13. Serotype conversion geneFrontiers in microbiology · 2023
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  16. Natural Transformation in a Classical-Biotype Vibrio cholerae Strain.Applied and environmental microbiology · 2021
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  17. Fur RepressesFrontiers in microbiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Rui WuNational Institute for Communicable Disease Control and Prevention, and State Key Laboratory of Infectious Disease Prevention and Control, Chinese Centre for Disease Control and Prevention, Changping, Beijing, People's Republic of China.
Meng ZhaoNational Institute for Communicable Disease Control and Prevention, and State Key Laboratory of Infectious Disease Prevention and Control, Chinese Centre for Disease Control and Prevention, Changping, Beijing, People's Republic of China.
Jing LiNational Institute for Communicable Disease Control and Prevention, and State Key Laboratory of Infectious Disease Prevention and Control, Chinese Centre for Disease Control and Prevention, Changping, Beijing, People's Republic of China.
He GaoNational Institute for Communicable Disease Control and Prevention, and State Key Laboratory of Infectious Disease Prevention and Control, Chinese Centre for Disease Control and Prevention, Changping, Beijing, People's Republic of China.
Biao KanNational Institute for Communicable Disease Control and Prevention, and State Key Laboratory of Infectious Disease Prevention and Control, Chinese Centre for Disease Control and Prevention, Changping, Beijing, People's Republic of China.
Weili LiangNational Institute for Communicable Disease Control and Prevention, and State Key Laboratory of Infectious Disease Prevention and Control, Chinese Centre for Disease Control and Prevention, Changping, Beijing, People's Republic of China.
State Key Laboratory of Infectious Disease Prevention and ControlNational Institute for Communicable Disease Control and Prevention · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TfoX (Sxy) and CRP are two important competence activators. The link between tfoX and CRP has been shown in H. influenza but lacking evidence of direct interaction. Recently a Sxy-dependent CRP (CRP-S) site autoregulating Sxy was reported in E. coli. Here, we show that the cAMP-CRP complex transcriptionally regulates tfoX expression through multiple canonical CRP (CRP-N) sites in Vibrios. This conclusion is supported by an analysis of the tfoX mRNA levels and tfoX transcriptional reporter fusions. The reduced expression of tfoX(VC) was restored by trans-complementation of crp in ∆crp and by exogenous cAMP in ∆cya. A promoter deletion analysis and the site-directed mutagenesis of the putative CRP-N sites revealed the presence of two functional CRP-N sites. The direct binding of cAMP-CRP to the tfoX(VC)promoter was demonstrated by EMSA assays. Additionally, the transcriptional start site (TSS) of tfoX(VF) in V. fluvialis was determined, and -10/-35 regions were predicted. Further comparison of the tfoX promoter in Vibrios revealed the existence of similar -10 motifs and putative CRP-N sites, indicating the conserved mechanism of CRP regulation on tfoX. Our study demonstrates the direct binding of the cAMP-CRP complex to tfoX promoter, and broadens the understanding of the molecular mechanism regulating tfoX in Vibrios.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBase SequenceBinding SitesCyclic AMPCyclic AMP Receptor ProteinDNA Transformation CompetenceElectrophoretic Mobility Shift AssayMolecular Sequence DataMutagenesis, Site-DirectedPromoter Regions, GeneticSequence Homology, Nucleic AcidTranscription, GeneticVibrioBacterial ProteinsCyclic AMPCyclic AMP Receptor Protein

Identifiers

PMID26442598
PMCPMC4595672
OpenAlexW2396063351

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.