ArticleFrontiers in bioengineering and biotechnology2015
On Accounting for Sequence-Specific Bias in Genome-Wide Chromatin Accessibility Experiments: Recent Advances and Contradictions.
Article in Frontiers in bioengineering and biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
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Who cites it
13 citing papers in PubMed.
- Epigenetic and transcriptional regulations prime cell fate before division during human pluripotent stem cell differentiation.Nature communications · 2023Article
- Fast decoding cell type-specific transcription factor binding landscape at single-nucleotide resolution.Genome research · 2021Article
- Specific chromatin changes mark lateral organ founder cells in the Arabidopsis inflorescence meristem.Journal of experimental botany · 2019Article
- Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling.Genome biology · 2019Article
- BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test.Nucleic acids research · 2019Article
- ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.BMC genomics · 2018Article
- CATaDa reveals global remodelling of chromatin accessibility during stem cell differentiation in vivo.eLife · 2018Article
- Robust detection of chromosomal interactions from small numbers of cells using low-input Capture-C.Nucleic acids research · 2017Article
- Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.Journal of visualized experiments : JoVE · 2017Article
- Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints.Genome research · 2017Article
- Correcting nucleotide-specific biases in high-throughput sequencing data.BMC bioinformatics · 2017Article
- Mocap: large-scale inference of transcription factor binding sites from chromatin accessibility.Nucleic acids research · 2017Article
- Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research.Progress in retinal and eye research · 2016Review
Corrections and comments
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Authors and funding
1 author.
Funding
No grant is acknowledged in the PubMed record.
Abstract
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.