Evidence map›Paper›PMID 26442034›Full record

ArticleFrontiers in plant science2015

Genetic variation of temperature-regulated curd induction in cauliflower: elucidation of floral transition by genome-wide association mapping and gene expression analysis.

Claudia Matschegewski, Holger Zetzsche, Yaser Hasan, Lena Leibeguth, William Briggs, Frank Ordon, Ralf Uptmoor

Abstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  14. Quantitative trait loci controlling leaf appearance and curd initiation of cauliflower in relation to temperature.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Claudia MatschegewskiChair of Agronomy, Faculty of Agriculture and Environmental Science, University of Rostock Rostock, Germany.
Holger ZetzscheInstitute of Resistance Research and Stress Tolerance, Julius-Kuehn Institute Quedlinburg, Germany.
Yaser HasanInstitute of Horticultural Production Systems, Leibniz Universität Hannover Hannover, Germany.
Lena LeibeguthChair of Agronomy, Faculty of Agriculture and Environmental Science, University of Rostock Rostock, Germany.
William BriggsSyngenta Seeds B.V., Enkhuizen Netherlands.
Frank OrdonInstitute of Resistance Research and Stress Tolerance, Julius-Kuehn Institute Quedlinburg, Germany.
Ralf UptmoorChair of Agronomy, Faculty of Agriculture and Environmental Science, University of Rostock Rostock, Germany ; Institute of Horticultural Production Systems, Leibniz Universität Hannover Hannover, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cauliflower (Brassica oleracea var. botrytis) is a vernalization-responsive crop. High ambient temperatures delay harvest time. The elucidation of the genetic regulation of floral transition is highly interesting for a precise harvest scheduling and to ensure stable market supply. This study aims at genetic dissection of temperature-dependent curd induction in cauliflower by genome-wide association studies and gene expression analysis. To assess temperature-dependent curd induction, two greenhouse trials under distinct temperature regimes were conducted on a diversity panel consisting of 111 cauliflower commercial parent lines, genotyped with 14,385 SNPs. Broad phenotypic variation and high heritability (0.93) were observed for temperature-related curd induction within the cauliflower population. GWA mapping identified a total of 18 QTL localized on chromosomes O1, O2, O3, O4, O6, O8, and O9 for curding time under two distinct temperature regimes. Among those, several QTL are localized within regions of promising candidate flowering genes. Inferring population structure and genetic relatedness among the diversity set assigned three main genetic clusters. Linkage disequilibrium (LD) patterns estimated global LD extent of r(2) = 0.06 and a maximum physical distance of 400 kb for genetic linkage. Transcriptional profiling of flowering genes FLOWERING LOCUS C (BoFLC) and VERNALIZATION 2 (BoVRN2) was performed, showing increased expression levels of BoVRN2 in genotypes with faster curding. However, functional relevance of BoVRN2 and BoFLC2 could not consistently be supported, which probably suggests to act facultative and/or might evidence for BoVRN2/BoFLC-independent mechanisms in temperature-regulated floral transition in cauliflower. Genetic insights in temperature-regulated curd induction can underpin genetically informed phenology models and benefit molecular breeding strategies toward the development of thermo-tolerant cultivars.

Indexed as

cauliflowercurd inductiongenome-wide association study (GWAS)linkage disequilibrium (LD)quantitative trait loci (QTL)single nucleotide polymorphism (SNP)transcriptional profilingvernalization

Identifiers

PMID26442034
PMCPMC4564693

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.