Evidence map›Paper›PMID 26441922›Full record

ArticleFrontiers in microbiology2015

Thiomonas sp. CB2 is able to degrade urea and promote toxic metal precipitation in acid mine drainage waters supplemented with urea.

Julien Farasin, Jérémy Andres, Corinne Casiot, Valérie Barbe, Jacques Faerber, David Halter, Dimitri Heintz, Sandrine Koechler, Didier Lièvremont, Raphael Lugan and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Mixotrophic Iron-OxidizingApplied and environmental microbiology · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Julien FarasinLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, Université de Strasbourg - Centre National de la Recherche Scientifique, Institut de Botanique Strasbourg, France.
Jérémy AndresLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, Université de Strasbourg - Centre National de la Recherche Scientifique, Institut de Botanique Strasbourg, France.
Corinne CasiotLaboratoire Hydrosciences Montpellier, UMR 5569, Centre National de la Recherche Scientifique-UM I, UM II, IRD, Université Montpellier 2, CCMSE Montpellier, France.
Valérie BarbeLaboratoire de Biologie Moléculaire Pour l'Etude des Génomes, CEA-IG-Genoscope Evry, France.
Jacques FaerberInstitut de Physique et de Chimie des Matériaux de Strasbourg, Université de Strasbourg, CNRS UMR 7504 Strasbourg, France.
David HalterLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, Université de Strasbourg - Centre National de la Recherche Scientifique, Institut de Botanique Strasbourg, France.
Dimitri HeintzPlateforme Métabolomique, UPR2357, Centre National de la Recherche Scientifique, Institut de Biologie Moléculaire des Plantes, Institut de Botanique Strasbourg, France.
Sandrine KoechlerLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, Université de Strasbourg - Centre National de la Recherche Scientifique, Institut de Botanique Strasbourg, France.
Didier LièvremontLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, Université de Strasbourg - Centre National de la Recherche Scientifique, Institut de Botanique Strasbourg, France.
Raphael LuganPlateforme Métabolomique, UPR2357, Centre National de la Recherche Scientifique, Institut de Biologie Moléculaire des Plantes, Institut de Botanique Strasbourg, France.
Marie MarchalLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, Université de Strasbourg - Centre National de la Recherche Scientifique, Institut de Botanique Strasbourg, France.
Frédéric PlewniakLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, Université de Strasbourg - Centre National de la Recherche Scientifique, Institut de Botanique Strasbourg, France.
Fabienne SebyHélioparc Pau Pyrénées Pau, France.
Philippe N BertinLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, Université de Strasbourg - Centre National de la Recherche Scientifique, Institut de Botanique Strasbourg, France.
Florence Arsène-PloetzeLaboratoire Génétique Moléculaire, Génomique et Microbiologie, UMR7156, Université de Strasbourg - Centre National de la Recherche Scientifique, Institut de Botanique Strasbourg, France.
Commissariat à l'Énergie Atomique et aux Énergies Alternatives · FRInstitut de Recherche pour le Développement · FRUniversité de Pau et des Pays de l'Adour · FRUniversité de Strasbourg · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The acid mine drainage (AMD) in Carnoulès (France) is characterized by the presence of toxic metals such as arsenic. Several bacterial strains belonging to the Thiomonas genus, which were isolated from this AMD, are able to withstand these conditions. Their genomes carry several genomic islands (GEIs), which are known to be potentially advantageous in some particular ecological niches. This study focused on the role of the "urea island" present in the Thiomonas CB2 strain, which carry the genes involved in urea degradation processes. First, genomic comparisons showed that the genome of Thiomonas sp. CB2, which is able to degrade urea, contains a urea genomic island which is incomplete in the genome of other strains showing no urease activity. The urease activity of Thiomonas sp. CB2 enabled this bacterium to maintain a neutral pH in cell cultures in vitro and prevented the occurrence of cell death during the growth of the bacterium in a chemically defined medium. In AMD water supplemented with urea, the degradation of urea promotes iron, aluminum and arsenic precipitation. Our data show that ureC was expressed in situ, which suggests that the ability to degrade urea may be expressed in some Thiomonas strains in AMD, and that this urease activity may contribute to their survival in contaminated environments.

Indexed as

acid stressadaptationaluminumarsenicmetabolomics

Identifiers

PMID26441922
PMCPMC4585258
OpenAlexW2104771015

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.