Evidence map›Paper›PMID 26441910›Full record

ArticleFrontiers in microbiology2015

Insights on virulence from the complete genome of Staphylococcus capitis.

David R Cameron, Jhih-Hang Jiang, Karl A Hassan, Liam D H Elbourne, Kellie L Tuck, Ian T Paulsen, Anton Y Peleg

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 66 citations in OpenAlex.

  1. Trial
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  8. Antibiotics (Basel, Switzerland) · 2024
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  11. Antibiotics (Basel, Switzerland) · 2023
    Review
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  14. Prevalence and antibiotic resistance ofFrontiers in cellular and infection microbiology · 2023
    Article
  15. May Sulfonamide Inhibitors of Carbonic Anhydrases fromInternational journal of molecular sciences · 2022
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  16. Article
  17. Skin Cancer-AssociatedCancers · 2022
    Article
  18. Endogenous endophthalmitis caused by Staphylococcus capitis.American journal of ophthalmology case reports · 2022
    Article
  19. Comparative genomics ofFrontiers in microbiology · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

David R CameronDepartment of Microbiology, Monash University Melbourne, VIC, Australia.
Jhih-Hang JiangDepartment of Microbiology, Monash University Melbourne, VIC, Australia.
Karl A HassanDepartment of Chemistry and Biomolecular Sciences, Macquarie University Sydney, NSW, Australia.
Liam D H ElbourneDepartment of Chemistry and Biomolecular Sciences, Macquarie University Sydney, NSW, Australia.
Kellie L TuckSchool of Chemistry, Monash University Melbourne, VIC, Australia.
Ian T PaulsenDepartment of Chemistry and Biomolecular Sciences, Macquarie University Sydney, NSW, Australia.
Anton Y PelegDepartment of Microbiology, Monash University Melbourne, VIC, Australia ; Department of Infectious Diseases, Alfred Hospital Melbourne, VIC, Australia.
Monash University · AUMacquarie University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Staphylococcus capitis is an opportunistic pathogen of the coagulase negative staphylococci (CoNS). Functional genomic studies of S. capitis have thus far been limited by a lack of available complete genome sequences. Here, we determined the closed S. capitis genome and methylome using Single Molecule Real Time (SMRT) sequencing. The strain, AYP1020, harbors a single circular chromosome of 2.44 Mb encoding 2304 predicted proteins, which is the smallest of all complete staphylococcal genomes sequenced to date. AYP1020 harbors two large mobile genetic elements; a plasmid designated pAYP1020 (59.6 Kb) and a prophage, ΦAYP1020 (48.5 Kb). Methylome analysis identified significant adenine methylation across the genome involving two distinct methylation motifs (1972 putative 6-methyladenine (m6A) residues identified). Putative adenine methyltransferases were also identified. Comparative analysis of AYP1020 and the closely related CoNS, S. epidermidis RP62a, revealed a host of virulence factors that likely contribute to S. capitis pathogenicity, most notably genes important for biofilm formation and a suite of phenol soluble modulins (PSMs); the expression/production of these factors were corroborated by functional assays. The complete S. capitis genome will aid future studies on the evolution and pathogenesis of the coagulase negative staphylococci.

Indexed as

coagulase-negative staphylococciCoNSgenomicsmethylationSMRT sequencing

Identifiers

PMID26441910
PMCPMC4585213
OpenAlexW2132507135

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.