Evidence map›Paper›PMID 26441080›Full record

ArticlePLoS neglected tropical diseases2015

New Insights into the Geographic Distribution of Mycobacterium leprae SNP Genotypes Determined for Isolates from Leprosy Cases Diagnosed in Metropolitan France and French Territories.

Florence Reibel, Aurélie Chauffour, Florence Brossier, Vincent Jarlier, Emmanuelle Cambau, Alexandra Aubry

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Evolutionary history ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  2. Population Genomics ofFrontiers in microbiology · 2020
    Article
  3. Leprosy in French Polynesia.New microbes and new infections · 2019
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Florence ReibelSorbonne Universités, UPMC Univ Paris 06; INSERM U1135, Immunity and Infectious diseases Center (Cimi-Paris), team 13, Paris, France; National Reference Center for Mycobacteria, Laboratory of bacteriology, Pitié-Salpêtrière Hospital, APHP, Paris, France.
Aurélie ChauffourSorbonne Universités, UPMC Univ Paris 06; INSERM U1135, Immunity and Infectious diseases Center (Cimi-Paris), team 13, Paris, France; National Reference Center for Mycobacteria, Laboratory of bacteriology, Pitié-Salpêtrière Hospital, APHP, Paris, France.
Florence BrossierSorbonne Universités, UPMC Univ Paris 06; INSERM U1135, Immunity and Infectious diseases Center (Cimi-Paris), team 13, Paris, France; National Reference Center for Mycobacteria, Laboratory of bacteriology, Pitié-Salpêtrière Hospital, APHP, Paris, France.
Vincent JarlierSorbonne Universités, UPMC Univ Paris 06; INSERM U1135, Immunity and Infectious diseases Center (Cimi-Paris), team 13, Paris, France; National Reference Center for Mycobacteria, Laboratory of bacteriology, Pitié-Salpêtrière Hospital, APHP, Paris, France.
Emmanuelle CambauUniversity Paris Diderot, IAME, UMR 1137, Sorbonne Paris Cité, Paris, France; APHP, Lariboisière-St Louis-Fernand Widal Hospital, Laboratory of Bacteriology-Virology, Paris, France; INSERM, IAME, UMR 1137, Paris, France.
Alexandra AubrySorbonne Universités, UPMC Univ Paris 06; INSERM U1135, Immunity and Infectious diseases Center (Cimi-Paris), team 13, Paris, France; National Reference Center for Mycobacteria, Laboratory of bacteriology, Pitié-Salpêtrière Hospital, APHP, Paris, France.
Inserm · FRAssistance Publique – Hôpitaux de Paris · FRSorbonne Paris Cité · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBetween 20 and 30 bacteriologically confirmed cases of leprosy are diagnosed each year at the French National Reference Center for mycobacteria. Patients are mainly immigrants from various endemic countries or living in French overseas territories. We aimed at expanding data regarding the geographical distribution of the SNP genotypes of the M. leprae isolates from these patients. METHODOLOGY/PRINCIPAL

findingsSkin biopsies were obtained from 71 leprosy patients diagnosed between January 2009 and December 2013. Data regarding age, sex and place of birth and residence were also collected. Diagnosis of leprosy was confirmed by microscopic detection of acid-fast bacilli and/or amplification by PCR of the M. leprae-specific RLEP region. Single nucleotide polymorphisms (SNP), present in the M. leprae genome at positions 14 676, 1 642 875 and 2 935 685, were determined with an efficiency of 94% (67/71). Almost all patients were from countries other than France where leprosy is still prevalent (n = 31) or from French overseas territories (n = 36) where leprosy is not totally eradicated, while only a minority (n = 4) was born in metropolitan France but have lived in other countries. SNP type 1 was predominant (n = 33), followed by type 3 (n = 17), type 4 (n = 11) and type 2 (n = 6). SNP types were concordant with those previously reported as prevalent in the patients' countries of birth. SNP types found in patients born in countries other than France (Comoros, Haiti, Benin, Congo, Sri Lanka) and French overseas territories (French Polynesia, Mayotte and La Réunion) not covered by previous work correlated well with geographical location and history of human settlements. CONCLUSIONS/SIGNIFICANCE: The phylogenic analysis of M. leprae strains isolated in France strongly suggests that French leprosy cases are caused by SNP types that are (a) concordant with the geographic origin or residence of the patients (non-French countries, French overseas territories, metropolitan France) or (b) more likely random in regions where diverse migration flows occurred.

Indexed as

Genetic VariationGenotypePhylogeographyPolymorphism, Single NucleotideAdolescentAdultAgedAged, 80 and overEmigrants and ImmigrantsFemaleFranceHumansLeprosyMaleMiddle AgedMycobacterium leprae

Identifiers

PMID26441080
PMCPMC4595418
OpenAlexW2145665332

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.