Evidence map›Paper›PMID 26439863›Full record

ArticleCell host & microbe2015

Cell Surface Proteomic Map of HIV Infection Reveals Antagonism of Amino Acid Metabolism by Vpu and Nef.

Nicholas J Matheson, Jonathan Sumner, Kim Wals, Radu Rapiteanu, Michael P Weekes, Raphael Vigan, Julia Weinelt, Michael Schindler, Robin Antrobus, Ana S H Costa and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Cell host & microbe, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 121 papers.

0numbers the graph read from it
0cells of the map it votes in
121citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

121 citing papers in PubMed, 175 citations in OpenAlex.

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  10. Isotope Labeling Techniques for Virus-Infected Cells.Methods in molecular biology (Clifton, N.J.) · 2025
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  16. Advances in HIV Research Using Mass Cytometry.Current HIV/AIDS reports · 2023
    Review
  17. Article
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61 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 3 countries.

Nicholas J MathesonCambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0XY, UK. Electronic address: njm25@cam.ac.uk.
Jonathan SumnerDepartment of Infectious Diseases, King's College London School of Medicine, Guy's Hospital, London SE1 9RT, UK.
Kim WalsCambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0XY, UK.
Radu RapiteanuCambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0XY, UK.
Michael P WeekesCambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0XY, UK.
Raphael ViganDepartment of Infectious Diseases, King's College London School of Medicine, Guy's Hospital, London SE1 9RT, UK.
Julia WeineltDepartment of Infectious Diseases, King's College London School of Medicine, Guy's Hospital, London SE1 9RT, UK.
Michael SchindlerHelmholtz Center Munich, Institute of Virology, 85764 Neuherberg, Germany; Institute of Medical Virology and Epidemiology of Viral Diseases, University Clinic Tübingen, 72076 Tübingen, Germany.
Robin AntrobusCambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0XY, UK.
Ana S H CostaMRC Cancer Unit, Hutchison/MRC Research Centre, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0XZ, UK.
Christian FrezzaMRC Cancer Unit, Hutchison/MRC Research Centre, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0XZ, UK.
Clary B ClishThe Broad Institute of the Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142, USA.
Stuart J D NeilDepartment of Infectious Diseases, King's College London School of Medicine, Guy's Hospital, London SE1 9RT, UK.
Paul J LehnerCambridge Institute for Medical Research, University of Cambridge, Cambridge Biomedical Campus, Cambridge CB2 0XY, UK. Electronic address: pjl30@cam.ac.uk.
University of Cambridge · GBGuy's Hospital · GBBroad Institute · USHutchison/MRC Research Centre · GBKing's College London · GBUniversity of Tübingen · DE

Funding

Medical Research Council G0801937Medical Research Council MC_UP_1101/3Medical Research Council MC_UU_12022/6Wellcome Trust 093964/Z/10/ZWellcome Trust 093966/Z/10/ZWellcome Trust 098049Wellcome Trust 100140Wellcome Trust 101835
6 · The paper itself

Abstract

Critical cell surface immunoreceptors downregulated during HIV infection have previously been identified using non-systematic, candidate approaches. To gain a comprehensive, unbiased overview of how HIV infection remodels the T cell surface, we took a distinct, systems-level, quantitative proteomic approach. >100 plasma membrane proteins, many without characterized immune functions, were downregulated during HIV infection. Host factors targeted by the viral accessory proteins Vpu or Nef included the amino acid transporter SNAT1 and the serine carriers SERINC3/5. We focused on SNAT1, a β-TrCP-dependent Vpu substrate. SNAT1 antagonism was acquired by Vpu variants from the lineage of SIVcpz/HIV-1 viruses responsible for pandemic AIDS. We found marked SNAT1 induction in activated primary human CD4+ T cells, and used Consumption and Release (CoRe) metabolomics to identify alanine as an endogenous SNAT1 substrate required for T cell mitogenesis. Downregulation of SNAT1 therefore defines a unique paradigm of HIV interference with immunometabolism.

Indexed as

Host-Pathogen InteractionsAmino AcidsCD4-Positive T-LymphocytesCell MembraneHIV-1Human Immunodeficiency Virus ProteinsMembrane Proteinsnef Gene Products, Human Immunodeficiency VirusProteomeProteomicsViral Regulatory and Accessory ProteinsViroporin ProteinsAmino AcidsHuman Immunodeficiency Virus ProteinsMembrane Proteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1ProteomeViral Regulatory and Accessory ProteinsViroporin Proteinsvpu protein, Human immunodeficiency virus 1

Identifiers

PMID26439863
PMCPMC4608997
OpenAlexW2167010970

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.