ArticleScientific reports2015
Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Sea Cucumber Apostichopus japonicus.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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27 citing papers in PubMed, 57 citations in OpenAlex.
- Analysis of Elimination Effects of Inbreeding on Genotype Frequency in Larval Stages of Chinese Shrimp.Biology · 2024Article
- Chromosome-level genome assembly of the sea cucumber Apostichopus japonicus.Scientific data · 2023Article
- Genomic selection for survival under naturally occurring Saprolegnia oomycete infection in farmed European whitefish Coregonus lavaretus.Journal of animal science · 2023Article
- Fine-mapping and association analysis of candidate genes for papilla number in sea cucumber,Marine life science & technology · 2022Article
- Identification of sex determination locus in sea cucumber Apostichopus japonicus using genome-wide association study.BMC genomics · 2022Article
- Linkage mapping and QTL analysis of growth traits in Rhopilema esculentum.Scientific reports · 2022Article
- A High-Density Genetic Map and QTL Fine Mapping for Growth- and Sex-Related Traits in Red Swamp Crayfish (Frontiers in genetics · 2022Article
- Article
- Genome survey and high-resolution genetic map provide valuable genetic resources for Fenneropenaeus chinensis.Scientific reports · 2021Article
- Segregation distortion: high genetic load suggested by a Chinese shrimp family under high-intensity selection.Scientific reports · 2020Article
- Maximising recombination across macadamia populations to generate linkage maps for genome anchoring.Scientific reports · 2020Article
- High accuracy of pooled DNA genotyping by 2b-RAD sequencing in the Pacific white shrimp, Litopenaeus vannamei.PloS one · 2020Article
- Construction of a high-density genetic linkage map and mapping of quantitative trait loci for growth-related traits in silver carp (Hypophthalmichthys molitrix).Scientific reports · 2019Article
- Analysis of genome-wide SNPs based on 2b-RAD sequencing of pooled samples reveals signature of selection in different populations ofJournal of biosciences · 2019Article
- The first genetic linkage map for Fraxinus pennsylvanica and syntenic relationships with four related species.Plant molecular biology · 2019Article
- A high-density genetic linkage map and QTL mapping for growth and sex of yellow drum (Nibea albiflora).Scientific reports · 2018Article
- Applications of genotyping by sequencing in aquaculture breeding and genetics.Reviews in aquaculture · 2018Review
- A high-resolution genetic linkage map and QTL fine mapping for growth-related traits and sex in the Yangtze River common carp (Cyprinus carpio haematopterus).BMC genomics · 2018Article
- SLAF-based high-density genetic map construction and QTL mapping for major economic traits in sea urchin Strongylocentrotus intermedius.Scientific reports · 2018Article
- Sea cucumber genome provides insights into saponin biosynthesis and aestivation regulation.Cell discovery · 2018Article
Corrections and comments
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Authors and funding
14 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genetic linkage maps are critical and indispensable tools in a wide range of genetic and genomic research. With the advancement of genotyping-by-sequencing (GBS) methods, the construction of a high-density and high-resolution linkage maps has become achievable in marine organisms lacking sufficient genomic resources, such as echinoderms. In this study, high-density, high-resolution genetic map was constructed for a sea cucumber species, Apostichopus japonicus, utilizing the 2b-restriction site-associated DNA (2b-RAD) method. A total of 7839 markers were anchored to the linkage map with the map coverage of 99.57%, to our knowledge, this is the highest marker density among echinoderm species. QTL mapping and association analysis consistently captured one growth-related QTL located in a 5 cM region of linkage group (LG) 5. An annotated candidate gene, retinoblastoma-binding protein 5 (RbBP5), which has been reported to be an important regulator of cell proliferation, was recognized in the QTL region. This linkage map represents a powerful tool for research involving both fine-scale QTL mapping and marker assisted selection (MAS), and will facilitate chromosome assignment and improve the whole-genome assembly of sea cucumber in the future.
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