Evidence map›Paper›PMID 26438722›Full record

ArticleThe EMBO journal2015

Phospholipid methylation controls Atg32-mediated mitophagy and Atg8 recycling.

Kaori Sakakibara, Akinori Eiyama, Sho W Suzuki, Machiko Sakoh-Nakatogawa, Nobuaki Okumura, Motohiro Tani, Ayako Hashimoto, Sachiyo Nagumo, Noriko Kondo-Okamoto, Chika Kondo-Kakuta and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Fluorescence Microscopy and Immunoblotting for Mitophagy in Budding Yeast.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
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  13. Yeast mitophagy: Unanswered questions.Biochimica et biophysica acta. General subjects · 2021
    Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Interplay Between Lipid Metabolism and Autophagy.Frontiers in cell and developmental biology · 2020
    Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Kaori SakakibaraGraduate School of Frontier Biosciences, Osaka University, Osaka, Japan.
Akinori EiyamaGraduate School of Frontier Biosciences, Osaka University, Osaka, Japan.
Sho W SuzukiGraduate School of Frontier Biosciences, Osaka University, Osaka, Japan Frontier Research Center, Tokyo Institute of Technology, Kanagawa, Japan.
Machiko Sakoh-NakatogawaFrontier Research Center, Tokyo Institute of Technology, Kanagawa, Japan.
Nobuaki OkumuraInstitute for Protein Research, Osaka University, Osaka, Japan.
Motohiro TaniDepartment of Chemistry, Kyushu University, Fukuoka, Japan.
Ayako HashimotoGraduate School of Frontier Biosciences, Osaka University, Osaka, Japan.
Sachiyo NagumoGraduate School of Frontier Biosciences, Osaka University, Osaka, Japan.
Noriko Kondo-OkamotoGraduate School of Frontier Biosciences, Osaka University, Osaka, Japan.
Chika Kondo-KakutaFrontier Research Center, Tokyo Institute of Technology, Kanagawa, Japan.
Eri AsaiFrontier Research Center, Tokyo Institute of Technology, Kanagawa, Japan.
Hiromi KirisakoFrontier Research Center, Tokyo Institute of Technology, Kanagawa, Japan.
Hitoshi NakatogawaFrontier Research Center, Tokyo Institute of Technology, Kanagawa, Japan.
Osamu KugeDepartment of Chemistry, Kyushu University, Fukuoka, Japan.
Toshifumi TakaoInstitute for Protein Research, Osaka University, Osaka, Japan.
Yoshinori OhsumiFrontier Research Center, Tokyo Institute of Technology, Kanagawa, Japan.
Koji OkamotoGraduate School of Frontier Biosciences, Osaka University, Osaka, Japan kokamoto@fbs.osaka-u.ac.jp.
Ube Frontier University · JPOsaka University · JPTokyo Institute of Technology · JPKyushu University · JPProtein Research Foundation · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Degradation of mitochondria via selective autophagy, termed mitophagy, contributes to mitochondrial quality and quantity control whose defects have been implicated in oxidative phosphorylation deficiency, aberrant cell differentiation, and neurodegeneration. How mitophagy is regulated in response to cellular physiology remains obscure. Here, we show that mitophagy in yeast is linked to the phospholipid biosynthesis pathway for conversion of phosphatidylethanolamine to phosphatidylcholine by the two methyltransferases Cho2 and Opi3. Under mitophagy-inducing conditions, cells lacking Opi3 exhibit retardation of Cho2 repression that causes an anomalous increase in glutathione levels, leading to suppression of Atg32, a mitochondria-anchored protein essential for mitophagy. In addition, loss of Opi3 results in accumulation of phosphatidylmonomethylethanolamine (PMME) and, surprisingly, generation of Atg8-PMME, a mitophagy-incompetent lipid conjugate of the autophagy-related ubiquitin-like modifier. Amelioration of Atg32 expression and attenuation of Atg8-PMME conjugation markedly rescue mitophagy in opi3-null cells. We propose that proper regulation of phospholipid methylation is crucial for Atg32-mediated mitophagy.

Indexed as

MitophagyAutophagy-Related Protein 8 FamilyAutophagy-Related ProteinsGene Expression Regulation, FungalHumansMethylationMicrotubule-Associated ProteinsMitochondriaPhospholipidsProtein TransportReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional ActivationAtg32 protein, S cerevisiaeATG8 protein, S cerevisiaeAutophagy-Related Protein 8 FamilyAutophagy-Related ProteinsMicrotubule-Associated ProteinsPhospholipidsReceptors, Cytoplasmic and NuclearSaccharomyces cerevisiae Proteinsautophagymethylationmitochondriaphospholipidyeast

Identifiers

PMID26438722
PMCPMC4641534
OpenAlexW2120994245

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.